Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo20g00336 | ATGGCCACAGAATTCTCCAAGTTCCGTAGTGCCTTTTCCCAAATACGGAAACGACCAACAGGCAATTACCAATTAACCCTTTTGGGCTTTTTTGGGTTCTTTTCCGCCACTTTTCTTACGAGAATCACGACGGAAAGCCGCACATTTAGTTTCTCTCTGCCGCCTTCGCCGCCGCCATCACCACCACCACCACCGCTTTCATTTGCCCTTTTTTGGGTTTTTTTTTCTTTTCTCGTTTTTTTGCCCTTTTATCTCTCTGTTATGCCCTTGATTTGTTCGTCGAACATGTTGAAGAACACTCGTAACAGCCCTGATTGGAACTCGGAATTTGGGTACGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGATGTTTTGGGGAAAGGCGCTATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATTGAGGTGGCTTGGAGTCAGGTGAAGCTCAATGAAGTTCTCCGGTCACCGGAGGATTTGCAGCGGTTGTATTCGGAAGTTCATCTACTTAGTACGCTTAAGCATGAATCGATCATGCGATTCTACACCTCTTGGATCGATGTCGAACGCAAAACGTTCAACTTCATTACTGAATTGTTTACTTCTGGAACGCTTAGAGAATATGTAAAGAAGTATAGGCGAGTCGATATCAGAGCCATTAAGAGCTGGGCGCGCCAGATTCTACGTGGGCTCGTTTATTTGCATGAACACAACCCTCCGATAATACACAGAGATTTGAAGTGCGATAATATCTTTGTAAACGGCCATCTTGGACAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCACCGGAATTATACGAGGAAGATTACAACGAGCTGGTTGATGTCTACTCGTTCGGCATGTGTGTTCTGGAGATGCTTACTTCCGAGTACCCGTATAGCGAGTGTTCTAATCCCGCACAGATTTACAAGAAAGTCACGTCGGGGAAGCTGCCAGCAGCATTGTACAAGATTCACGACGCGGAAGCACAGAGATTTATTAAGAAATGTTTGGTACCGGTATCGATGAGGGCGTCTGCTAAGGAACTCTTTGCTGATCCATTTTTGAAGGTCGATGGAGATAGATCTTTGTCGATCGAGAGGAATCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTCGGTGAAGGTTTGAACAGGACGAACATGACGATCACCGGGAAGCTGAACCCCGAAGACGATACGCTCTTTCTTAGAGTTCAGATTGCTGATAAAGATGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTTAACGACACAGCGTTAGACGTAGCAATGGAGATGGTGAAAGAATTGGAGATCTCCGATTGGGAGCCGTTCGAAATAGCGGACATGATCGAAGGAGAGATATCGGCTCTGGTTCCGAACTGGAATAGAAGTGAGTTACCCAACCATAGACTCGGCTTCAGCTATTCAGAAGAAGACGATGATGCAGCTCATCGTACTCTCCGCTCCATCTCCTCGTCGTCCCGAGCAACGACTTTGAGTTTCATCACCTCTCCTAAAACAAATCAAAACATATCAAATGGTTTAAGTTGGTTCCCAGATGAAACGCTCGACGATAGCAGCTCACAGTGCTCATCGGCGTCGGGAAAATACTCGAACTTGAATTACGTCAGCAACGACGAGTATGAGACCGGTATGAGTTCAGTCCGGGTAGATCAACATAACAACATGAATAAGATTCAAAACTCCTCAAGATTTTGTCCTGTTGAGAGCCGCAAAAACAAGGATTTCATGGCTGGGCTTCTATACAAGCAGAGCCAATGTGCGGTAGCAGGGTCATCTCAAGGAGCTACATCTGGTCGCAAAGACAAGAGGGGAACGGACGGCCGGACATTAACAAGGAACAGGTCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTGGTCGAGGAAGTGAATCGAAGACGGTTATTCAAGACGGTTGGAGCGGTTGAAAGCATCGGGTTTCAACCACCTTGTGAGGTTTCTTCCAGCAAAAGGGTTTCGAGTAGGCAACCGATCGGGAACCGAAGTAGCGATGTAGCGAGAACGAGGAGAAACTACGATATTAGGTGGGAAGTTGTTGGAAGGAGAACATGA | 2205 | 46.21 | MATEFSKFRSAFSQIRKRPTGNYQLTLLGFFGFFSATFLTRITTESRTFSFSLPPSPPPSPPPPPLSFALFWVFFSFLVFLPFYLSVMPLICSSNMLKNTRNSPDWNSEFGYVETDPTCRYGRFEDVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVERKTFNFITELFTSGTLREYVKKYRRVDIRAIKSWARQILRGLVYLHEHNPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEEDYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIHDAEAQRFIKKCLVPVSMRASAKELFADPFLKVDGDRSLSIERNQNQKPFLNAKEMEKLHFGEGLNRTNMTITGKLNPEDDTLFLRVQIADKDGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELPNHRLGFSYSEEDDDAAHRTLRSISSSSRATTLSFITSPKTNQNISNGLSWFPDETLDDSSSQCSSASGKYSNLNYVSNDEYETGMSSVRVDQHNNMNKIQNSSRFCPVESRKNKDFMAGLLYKQSQCAVAGSSQGATSGRKDKRGTDGRTLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQPPCEVSSSKRVSSRQPIGNRSSDVARTRRNYDIRWEVVGRRT | 734 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 1658918 | 1662708 | + | CmoCh20G003360.1 | Cmo20g00336 | 404653 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo20g00336 | 734 | SMART | serkin_6 | 122 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo20g00336 | 734 | Gene3D | Phosphorylase Kinase; domain 1 | 106 | 203 | - | - | |
| Cmo20g00336 | 734 | ProSiteProfiles | Protein kinase domain profile. | 122 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo20g00336 | 734 | CDD | STKc_WNK | 120 | 380 | - | - | |
| Cmo20g00336 | 734 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED | 106 | 714 | - | - | |
| Cmo20g00336 | 734 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 386 | - | - | |
| Cmo20g00336 | 734 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 246 | 258 | IPR008271 | GO:0004672|GO:0006468 | |
| Cmo20g00336 | 734 | SUPERFAMILY | Protein kinase-like (PK-like) | 124 | 381 | IPR011009 | - | |
| Cmo20g00336 | 734 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 106 | 714 | - | - | |
| Cmo20g00336 | 734 | Pfam | Protein kinase domain | 125 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo02g00700 | Cmo20g00336 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g00308 | Cmo-Chr3:4283942 | Cmo20g00336 | Cmo-Chr20:1658918 | 0 | dispersed | |
| Cmo18g00155 | Cmo-Chr18:1078095 | Cmo20g00336 | Cmo-Chr20:1658918 | 1.38E-160 | dispersed | |
| Cmo02g00700 | Cmo-Chr2:4415242 | Cmo20g00336 | Cmo-Chr20:1658918 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 75143 | PF00069 | Pkinase | 1.90E-47 | CL0016 | Cmo | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo20g00336 | K08867 | - | csv:101203757 | 1137.87 |