Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00336 ATGGCCACAGAATTCTCCAAGTTCCGTAGTGCCTTTTCCCAAATACGGAAACGACCAACAGGCAATTACCAATTAACCCTTTTGGGCTTTTTTGGGTTCTTTTCCGCCACTTTTCTTACGAGAATCACGACGGAAAGCCGCACATTTAGTTTCTCTCTGCCGCCTTCGCCGCCGCCATCACCACCACCACCACCGCTTTCATTTGCCCTTTTTTGGGTTTTTTTTTCTTTTCTCGTTTTTTTGCCCTTTTATCTCTCTGTTATGCCCTTGATTTGTTCGTCGAACATGTTGAAGAACACTCGTAACAGCCCTGATTGGAACTCGGAATTTGGGTACGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGATGTTTTGGGGAAAGGCGCTATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATTGAGGTGGCTTGGAGTCAGGTGAAGCTCAATGAAGTTCTCCGGTCACCGGAGGATTTGCAGCGGTTGTATTCGGAAGTTCATCTACTTAGTACGCTTAAGCATGAATCGATCATGCGATTCTACACCTCTTGGATCGATGTCGAACGCAAAACGTTCAACTTCATTACTGAATTGTTTACTTCTGGAACGCTTAGAGAATATGTAAAGAAGTATAGGCGAGTCGATATCAGAGCCATTAAGAGCTGGGCGCGCCAGATTCTACGTGGGCTCGTTTATTTGCATGAACACAACCCTCCGATAATACACAGAGATTTGAAGTGCGATAATATCTTTGTAAACGGCCATCTTGGACAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCACCGGAATTATACGAGGAAGATTACAACGAGCTGGTTGATGTCTACTCGTTCGGCATGTGTGTTCTGGAGATGCTTACTTCCGAGTACCCGTATAGCGAGTGTTCTAATCCCGCACAGATTTACAAGAAAGTCACGTCGGGGAAGCTGCCAGCAGCATTGTACAAGATTCACGACGCGGAAGCACAGAGATTTATTAAGAAATGTTTGGTACCGGTATCGATGAGGGCGTCTGCTAAGGAACTCTTTGCTGATCCATTTTTGAAGGTCGATGGAGATAGATCTTTGTCGATCGAGAGGAATCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTCGGTGAAGGTTTGAACAGGACGAACATGACGATCACCGGGAAGCTGAACCCCGAAGACGATACGCTCTTTCTTAGAGTTCAGATTGCTGATAAAGATGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTTAACGACACAGCGTTAGACGTAGCAATGGAGATGGTGAAAGAATTGGAGATCTCCGATTGGGAGCCGTTCGAAATAGCGGACATGATCGAAGGAGAGATATCGGCTCTGGTTCCGAACTGGAATAGAAGTGAGTTACCCAACCATAGACTCGGCTTCAGCTATTCAGAAGAAGACGATGATGCAGCTCATCGTACTCTCCGCTCCATCTCCTCGTCGTCCCGAGCAACGACTTTGAGTTTCATCACCTCTCCTAAAACAAATCAAAACATATCAAATGGTTTAAGTTGGTTCCCAGATGAAACGCTCGACGATAGCAGCTCACAGTGCTCATCGGCGTCGGGAAAATACTCGAACTTGAATTACGTCAGCAACGACGAGTATGAGACCGGTATGAGTTCAGTCCGGGTAGATCAACATAACAACATGAATAAGATTCAAAACTCCTCAAGATTTTGTCCTGTTGAGAGCCGCAAAAACAAGGATTTCATGGCTGGGCTTCTATACAAGCAGAGCCAATGTGCGGTAGCAGGGTCATCTCAAGGAGCTACATCTGGTCGCAAAGACAAGAGGGGAACGGACGGCCGGACATTAACAAGGAACAGGTCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTGGTCGAGGAAGTGAATCGAAGACGGTTATTCAAGACGGTTGGAGCGGTTGAAAGCATCGGGTTTCAACCACCTTGTGAGGTTTCTTCCAGCAAAAGGGTTTCGAGTAGGCAACCGATCGGGAACCGAAGTAGCGATGTAGCGAGAACGAGGAGAAACTACGATATTAGGTGGGAAGTTGTTGGAAGGAGAACATGA 2205 46.21 MATEFSKFRSAFSQIRKRPTGNYQLTLLGFFGFFSATFLTRITTESRTFSFSLPPSPPPSPPPPPLSFALFWVFFSFLVFLPFYLSVMPLICSSNMLKNTRNSPDWNSEFGYVETDPTCRYGRFEDVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVERKTFNFITELFTSGTLREYVKKYRRVDIRAIKSWARQILRGLVYLHEHNPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEEDYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIHDAEAQRFIKKCLVPVSMRASAKELFADPFLKVDGDRSLSIERNQNQKPFLNAKEMEKLHFGEGLNRTNMTITGKLNPEDDTLFLRVQIADKDGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELPNHRLGFSYSEEDDDAAHRTLRSISSSSRATTLSFITSPKTNQNISNGLSWFPDETLDDSSSQCSSASGKYSNLNYVSNDEYETGMSSVRVDQHNNMNKIQNSSRFCPVESRKNKDFMAGLLYKQSQCAVAGSSQGATSGRKDKRGTDGRTLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQPPCEVSSSKRVSSRQPIGNRSSDVARTRRNYDIRWEVVGRRT 734
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 1658918 1662708 + CmoCh20G003360.1 Cmo20g00336 404653
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00336 734 SMART serkin_6 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00336 734 Gene3D Phosphorylase Kinase; domain 1 106 203 - -
Cmo20g00336 734 ProSiteProfiles Protein kinase domain profile. 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00336 734 CDD STKc_WNK 120 380 - -
Cmo20g00336 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 106 714 - -
Cmo20g00336 734 Gene3D Transferase(Phosphotransferase) domain 1 205 386 - -
Cmo20g00336 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Cmo20g00336 734 SUPERFAMILY Protein kinase-like (PK-like) 124 381 IPR011009 -
Cmo20g00336 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 106 714 - -
Cmo20g00336 734 Pfam Protein kinase domain 125 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo02g00700 Cmo20g00336 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00308 Cmo-Chr3:4283942 Cmo20g00336 Cmo-Chr20:1658918 0 dispersed
Cmo18g00155 Cmo-Chr18:1078095 Cmo20g00336 Cmo-Chr20:1658918 1.38E-160 dispersed
Cmo02g00700 Cmo-Chr2:4415242 Cmo20g00336 Cmo-Chr20:1658918 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75143 PF00069 Pkinase 1.90E-47 CL0016 Cmo PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00336 K08867 - csv:101203757 1137.87