Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00338 ATGTGGGACACTCGCGCCTTGCACGGTATCTTCAGACGCGTGGATATGCGTTCATATGCCTGCCTCTGCTTTCTCCATAGGATGATTCCGAACCAAAGGTACGAGCTCGGCAAGCTCCTTGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCCCGCGACCTCCATTCCGGCCAAAGCGTCGCCATCAAAGTCATCAACAAGAAGAAGATCAACGGCTCAATCCTAATGCTCAACATCAAGCGGGAGATCACCATCATGCGCCATCTCCGCCACCCTCACATCGTCAAACTCCTTGAGATTCTCGCTACCAAATCCAAGATCTACTTCGTCATGGAGTTCGTCAGAGGCGGTGAGCTCTTCGCTAAGATCGCCATTGGCAGGTTCAGCGAGAATCTCAGCCGGAAATTCTTCCGCCAGTTGATCTCCGCCGTTGGATTCTGTCACGCGCGTGGGATCTACCACCGCGATTTGAAGCCGGAGAATCTCCTCGTCGATGAGAATGCGAATCTGAAGGTTTCCGACTTCGGTCTCAGTGCGGTTACGGATCAGATCCGCGCCGATGGCCTTTTGCATACTCTCTGTGGAACTCCGGCGTATGTCGCGCCGGAGATTCTATCGAAGAAGGGCTACGACGGTGCGAAAATCGATGTGTGGTCATGTGGTGTGACTCTCTTCGTGTTGAACGCCGGTTACCTTCCGTTCAACGATTCGAATCTAATGGTGTTGTATAAGAAGATTTACAGGGGGGATTATCGGTGTCCTAAATGGATGTCGCCTGATCTCCAGAGGTTTCTGTCACGACTTCTCGATACGAATCCCCAAACCAGGATCACCATCAATGAGATTCTGAATGATCCGTGGTTCACAAATGGAGAAGATACAGACATCAATTTCTACGATGATTACGAGGTCAAATCGGAAGCTAAGGTCGAATCTCCATCGAAGAACTTAAACGCATTCGACATTATATCGTTCTCGTCGGGATTAGATCTCTCTGGTTTGTTCGACGATTCGCAATACGCAGTGGAGGACAGTGAGCGATTCATACTGGCAGAGTCGCCGGAAAAGATCCTGGAAGAGGTGGAGGAATTCGCTAGGTCTGAGAATTTGAAGGTTAAGAAACAGAGAGAATTTTTAGTTGAATTGTTTGGACAGAATCATAATTTTTCTATCCGGATAGAAATTTTCCGGTTGATCGACGGATTGGCGGTGGTGGAGGTGAGAAGAAGAGGTGTCGATGCAGGATCATATAAGCAACTGTTGAAGAAAAAGCTGAAATGTCATCTCATCCACAACGTAGCGTCGACGTCCCGATAG 1317 49.28 MWDTRALHGIFRRVDMRSYACLCFLHRMIPNQRYELGKLLGCGAFAKVYHARDLHSGQSVAIKVINKKKINGSILMLNIKREITIMRHLRHPHIVKLLEILATKSKIYFVMEFVRGGELFAKIAIGRFSENLSRKFFRQLISAVGFCHARGIYHRDLKPENLLVDENANLKVSDFGLSAVTDQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKIDVWSCGVTLFVLNAGYLPFNDSNLMVLYKKIYRGDYRCPKWMSPDLQRFLSRLLDTNPQTRITINEILNDPWFTNGEDTDINFYDDYEVKSEAKVESPSKNLNAFDIISFSSGLDLSGLFDDSQYAVEDSERFILAESPEKILEEVEEFARSENLKVKKQREFLVELFGQNHNFSIRIEIFRLIDGLAVVEVRRRGVDAGSYKQLLKKKLKCHLIHNVASTSR 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1665343 1669002 + CmoCh20G003380.1 Cmo20g00338 404655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00338 438 PANTHER - 32 433 - -
Cmo20g00338 438 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 32 433 - -
Cmo20g00338 438 Pfam NAF domain 315 374 IPR004041 GO:0007165
Cmo20g00338 438 Gene3D Transferase(Phosphotransferase) domain 1 117 295 - -
Cmo20g00338 438 Gene3D Phosphorylase Kinase; domain 1 31 116 - -
Cmo20g00338 438 ProSiteProfiles Protein kinase domain profile. 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00338 438 SUPERFAMILY Protein kinase-like (PK-like) 18 296 IPR011009 -
Cmo20g00338 438 Pfam Protein kinase domain 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00338 438 SMART serkin_6 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00338 438 Gene3D Kinase associated domain 1, KA1 313 433 - -
Cmo20g00338 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Cmo20g00338 438 CDD CIPK_C 318 417 - -
Cmo20g00338 438 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Cmo20g00338 438 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00704 Cmo20g00338 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00313 Cmo-Chr3:4316184 Cmo20g00338 Cmo-Chr20:1665343 1.60E-176 dispersed
Cmo07g01270 Cmo-Chr7:6968245 Cmo20g00338 Cmo-Chr20:1665343 1.00E-178 dispersed
Cmo20g00338 Cmo-Chr20:1665343 Cmo07g00176 Cmo-Chr7:930218 1.91E-160 dispersed
Cmo02g00704 Cmo-Chr2:4428434 Cmo20g00338 Cmo-Chr20:1665343 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75144 PF00069 Pkinase 2.50E-70 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00338 - - cmos:111448499 855.514