Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00339 ATGGACGCAGCAATAGGGAAGCGCCAGGGAGCTCTTGCTGAGCCATCCGGCTTTCGGCAGAAAAGTGGGCTGTGGTGGTTGATCTTCATTAAAGAGAAACTAGTGGCTAGTGTGATGGTTCAAAGCTACGAATTAGGAAGATTGCTAGGCCAAGGAACATTCGCTAAGGTATATTATGCGCGGAATACAGTAAACAACCAAAGCGTGGCCATTAAGGTGATCGATAAAGGAAGGATTACGAAGGCTACGCTAATTGATCGTATTAAGCATGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTGTATATCTGTATGAGGTTATGGCTACCAAGACTAAGATTTACTTTGTTTTGGAATATGCAAAAGGTGTTGAGCTCTTTGACAAAGTTGCTAAAGGGAGGCTGAATGAGGATGTTGCTTGGAAATACTTTTATCAATTAATCCATGCTATTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGACATAAAGCCTGAGAACATACTGCTTGATGAAAATGAAAATCTTAAGTCGAGTCCGGGTGTCGAGATGGGTTGCTACACACGATTTGTGGCACACCCGGCTTATGTTGCCCCTGAAGTTATCAGTAGGAAGGGCTATGATGGTTATCTCCCGTTCCACGACTCGAATTTAATGGAGATGTATAGGAAGATTGAGAAAGCAGACTATAAATGTCCTAGTTGGTTCCCTCGTGAAATGCAGAGGCTGCTAAGTCGGATGCTTGATCCAAACCCCGTTACGAGGACTTCCATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGGTCTATGAATGTAAGAAGTGGAACAAAAGATGATGCTATAGCGGCTGTTTCAGATGGAAATCAAGAGATGGATAGACCTCCAACTTTGAATGCGTTGGACCTCGTCTCCCTTTCGACGGGGTTCGACCTATCGAGTTTATTTGAAGACGATTCAAGGAAGAAAGAAAGGTTGTTTACTTGTAGAAAACCGGCCTCTGTTCTTCTCTCGAAACTAGAAGAAATTGCTAAACTTGTTCGGTTTCGAGTGCAGAAGAAAGAAGCAGGCCTACTGAGGCTTGAGGCACTAACAGAGGGAAAAAAAGGGGTGTTGTCCATTGATACAGAGATCTATGAGGTTACTCCATCTTTTTATTTGGTGGAAATGAAAAAATCAAATGGAGACACATTGGAATATCAGAAGATATTGGAAGAGGACATAAGGCCAGCTCTACAGGATCTTGTATGGGTTTGGCGAGGTGAGCACGAGCAGCAGCAGCAACGAAAGCCTCGGCCTCAGCCTCAGCCTCGGCCAAATGACAGAAGCTCATCATAA 1356 42.99 MDAAIGKRQGALAEPSGFRQKSGLWWLIFIKEKLVASVMVQSYELGRLLGQGTFAKVYYARNTVNNQSVAIKVIDKGRITKATLIDRIKHEISIMRLVRHPNIVYLYEVMATKTKIYFVLEYAKGVELFDKVAKGRLNEDVAWKYFYQLIHAIDFCHSRGVYHRDIKPENILLDENENLKSSPGVEMGCYTRFVAHPAYVAPEVISRKGYDGYLPFHDSNLMEMYRKIEKADYKCPSWFPREMQRLLSRMLDPNPVTRTSIAMIRQSSWFKKGLRSMNVRSGTKDDAIAAVSDGNQEMDRPPTLNALDLVSLSTGFDLSSLFEDDSRKKERLFTCRKPASVLLSKLEEIAKLVRFRVQKKEAGLLRLEALTEGKKGVLSIDTEIYEVTPSFYLVEMKKSNGDTLEYQKILEEDIRPALQDLVWVWRGEHEQQQQRKPRPQPQPRPNDRSSS 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1670464 1672663 - CmoCh20G003390.1 Cmo20g00339 404656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00339 451 PANTHER - 36 436 - -
Cmo20g00339 451 ProSiteProfiles Protein kinase domain profile. 43 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00339 451 MobiDBLite consensus disorder prediction 428 451 - -
Cmo20g00339 451 Gene3D Transferase(Phosphotransferase) domain 1 35 303 - -
Cmo20g00339 451 SMART serkin_6 43 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00339 451 SUPERFAMILY Protein kinase-like (PK-like) 40 271 IPR011009 -
Cmo20g00339 451 Pfam Protein kinase domain 43 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00339 451 CDD CIPK_C 305 419 - -
Cmo20g00339 451 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Cmo20g00339 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Cmo20g00339 451 Pfam NAF domain 301 359 IPR004041 GO:0007165
Cmo20g00339 451 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Cmo20g00339 451 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 36 436 - -
Cmo20g00339 451 Gene3D Kinase associated domain 1, KA1 304 424 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00706 Cmo20g00339 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00339 Cmo-Chr20:1670464 Cmo07g01272 Cmo-Chr7:6994481 3.27E-164 dispersed
Cmo02g00706 Cmo-Chr2:4431875 Cmo20g00339 Cmo-Chr20:1670464 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75145 PF00069 Pkinase 6.20E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00339 - - csv:101206404 629.787