Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00342 ATGGGTATCACCACTTCTCATACCCCAAAAAATGTAGTGATTTTTGTCTTAGCTTTGCAGCTGGTCTTCCTTTTGATGGGCAGCTCCTCAGCCCAGCTCTCCACTTCCTTCTACTCCAAGACCTGTCCCAAGCTCCTCCCGATCGTCCGCTCGGGCGTCCAATCCGCCATCGCAAAGGAAACCCGCATGGGCGCTTCCCTTCTCCGTCTCCACTTTCATGACTGCTTTGTTAACGGATGTGACGGGTCAATTCTTTTAGACGATACTGCCACTTTTAGAGGAGAACAAACAGCTCCTCCAAATAATAGGTCTGTTCGAGGTTTTGACGTCATAAAAGCTATTAAGAGTAGTGTGGAAAAAGCTTGTCCTGGTGTTGTCTCCTGTGCTGATATTTTGACTCTTACAGCTCATGATTCAGTCAACATTTTGGGAGGACCAACTTGGGAGGTGAAACTAGGACGAAGGGATTCGAAAACAGCTAGCTTCTCCGCCGCTAGCAGCGGTGTCATCCCTCCGCCTAGTTCAACCCTTGCTAACCTCATCAATCGATTCAGTGCTAAAGGCCTCTCCACTAAAGACATGGTTGCCTTGTCTGGAGCCCACACGATAGGTCTAGCAAGGTGCACTAGCTTCAGGAACCGTATATACAATGAGAGCAACATTGACGCTTCATTTGCAAAGCTAAGACAACGCAGCTGTCCGAGAAGAGGAGGAAATGACAATCTTGCCCCTCTAGATGTTGCAACGCCAAAGTTTTTTGATAACTATTACTACAAGAACCTTTTGAACCAAAAGGGCTTACTCCACTCTGACCAGGTCCTCCACAATGGCGGTTCCACCGATTCCTTGGTAGAACAATACAGTAAAAATGATAAGATTTTCGATGCCGATTTCGTAACGGCAATGATTAAAATGGGAGACATTCAACCGCTCACCGGATCTAAGGGCGAGATCAGGAAGGTCTGCAGCAAACCCAACTAA 981 47.2 MGITTSHTPKNVVIFVLALQLVFLLMGSSSAQLSTSFYSKTCPKLLPIVRSGVQSAIAKETRMGASLLRLHFHDCFVNGCDGSILLDDTATFRGEQTAPPNNRSVRGFDVIKAIKSSVEKACPGVVSCADILTLTAHDSVNILGGPTWEVKLGRRDSKTASFSAASSGVIPPPSSTLANLINRFSAKGLSTKDMVALSGAHTIGLARCTSFRNRIYNESNIDASFAKLRQRSCPRRGGNDNLAPLDVATPKFFDNYYYKNLLNQKGLLHSDQVLHNGGSTDSLVEQYSKNDKIFDADFVTAMIKMGDIQPLTGSKGEIRKVCSKPN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1675436 1676862 - CmoCh20G003420.1 Cmo20g00342 404659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00342 326 Gene3D - 37 323 - -
Cmo20g00342 326 SUPERFAMILY Heme-dependent peroxidases 32 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 ProSiteProfiles Plant heme peroxidase family profile. 32 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Cmo20g00342 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Cmo20g00342 326 CDD secretory_peroxidase 32 324 IPR033905 GO:0004601|GO:0042744
Cmo20g00342 326 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PANTHER PEROXIDASE 12 324 - -
Cmo20g00342 326 Gene3D Peroxidase, domain 2 171 305 - -
Cmo20g00342 326 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 Pfam Peroxidase 49 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00342 326 PANTHER PEROXIDASE 72-RELATED 12 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00746 Cmo20g00342 CCT
Cmo01g00746 Cmo20g00342 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00748 Cmo-Chr1:3882023 Cmo20g00342 Cmo-Chr20:1675436 1.57E-148 dispersed
Cmo20g00342 Cmo-Chr20:1675436 Cmo20g00343 Cmo-Chr20:1681636 1.98E-169 tandem
Cmo02g00444 Cmo-Chr2:2332209 Cmo20g00342 Cmo-Chr20:1675436 1.72E-92 transposed
Cmo03g01001 Cmo-Chr3:7539228 Cmo20g00342 Cmo-Chr20:1675436 1.05E-106 transposed
Cmo15g00169 Cmo-Chr15:782241 Cmo20g00342 Cmo-Chr20:1675436 9.79E-144 transposed
Cmo02g00708 Cmo-Chr2:4439498 Cmo20g00342 Cmo-Chr20:1675436 5.24E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00342 K00430 - csv:101207371 564.303