Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00343 ATGGCGATTGCATCCCTTTCTCGTCCCAACAAAATGGTTGTGGCTTTAGCCTTAGCCTTATTCGCCGTGTTCATGGGGAACTCATCGGCTCATCTCTCTCCCGATTTCTACTACAAGAGCTGCCCCAAGCTCCTTAGCACTGTCCGAGCTGGTGTTCGGTCTGCCGTGGCTAAAGAACCTCGCATGGGCGCTTCCCTTCTCCGCCTCCACTTTCATGACTGCTTCGTTAACGGTTGCGATGGATCGATCCTTCTGGAAGATACTCCTACGTTTACGGGAGAGCAAACTGCAGCTCCCAATAATAGATCCGTTAGAGGGTTCAATGTGATTGAGAGTATAAAGAAAAATCTTGAAAAAGTTTGTCCGGGTGTTGTCTCTTGTGCTGATATATTGACTCTTTCTGCTCGTGACTCTGTCGTGGCACTTGGAGGACCAAGTTGGAAGGTTAAATTAGGGAGAAGAGATTCCAAAACATTATTTCAGCTTGGAGGACCAAGTTGGAAGGTTAAATTAGGGAGAAGAGATTCCAAAACAGCCAGCTTCTCTGATGTCGTTGGTGCCATTCCTCCGCCAACTTCCACCCTCGACACCCTCATCAACCGATTCAACACTAAGGGCCTCTCCCCTCGAGACTTGGTTGCCTTATCCGGAGCCCACACCATTGGACAAGCTCGGTGTTTATTTTTCAAGAATCGTATATACAACGAGACCAACATCGACGAGTCATTTGCTAAAGAGAGGCAACGAAGCTGCCCAAGAAATGGAGGCGACGACAATCGTGCCCCTTTGGACTTTAGAACCCCAAAGCTTTTCGATAACTACTACTACAAGAACCTTTTGGAGAAGAAGGCCCTGCTTCGCTCCGATCAGGTGCTCCACGACGGCGGATCCACTGATTCCTTGGTTGAACTCTACGGTGATGATAGTGATGCCTTTGAGTCTGACTTCGTGGCTGCTATGATCAAGATGGGCGACATTCAACCACTCACTGGATCGCAAGGCCAGATCCGAAAGGTCTGCAGCCGACCCAATTGA 1035 48.99 MAIASLSRPNKMVVALALALFAVFMGNSSAHLSPDFYYKSCPKLLSTVRAGVRSAVAKEPRMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNRSVRGFNVIESIKKNLEKVCPGVVSCADILTLSARDSVVALGGPSWKVKLGRRDSKTLFQLGGPSWKVKLGRRDSKTASFSDVVGAIPPPTSTLDTLINRFNTKGLSPRDLVALSGAHTIGQARCLFFKNRIYNETNIDESFAKERQRSCPRNGGDDNRAPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYGDDSDAFESDFVAAMIKMGDIQPLTGSQGQIRKVCSRPN 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1681636 1683051 - CmoCh20G003430.1 Cmo20g00343 404660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00343 344 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Plant peroxidase signature 262 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Plant peroxidase signature 278 295 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Plant peroxidase signature 318 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 ProSiteProfiles Plant heme peroxidase family profile. 31 344 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 CDD secretory_peroxidase 31 342 IPR033905 GO:0004601|GO:0042744
Cmo20g00343 344 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Cmo20g00343 344 PANTHER PEROXIDASE 72-RELATED 12 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PANTHER PEROXIDASE 72-RELATED 162 341 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 SUPERFAMILY Heme-dependent peroxidases 32 158 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PANTHER PEROXIDASE 12 158 - -
Cmo20g00343 344 PANTHER PEROXIDASE 162 341 - -
Cmo20g00343 344 SUPERFAMILY Heme-dependent peroxidases 160 344 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 Gene3D Peroxidase, domain 2 189 323 - -
Cmo20g00343 344 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Haem peroxidase superfamily signature 211 226 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 PRINTS Haem peroxidase superfamily signature 264 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 ProSitePatterns Peroxidases proximal heme-ligand signature. 211 221 IPR019793 -
Cmo20g00343 344 Pfam Peroxidase 48 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 Pfam Peroxidase 161 307 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00343 344 Gene3D - 32 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00708 Cmo-Chr2:4439498 Cmo20g00343 Cmo-Chr20:1681636 0 dispersed
Cmo15g00169 Cmo-Chr15:782241 Cmo20g00343 Cmo-Chr20:1681636 1.96E-136 dispersed
Cmo20g00343 Cmo-Chr20:1681636 Cmo11g01977 Cmo-Chr11:13592179 6.88E-109 dispersed
Cmo20g00343 Cmo-Chr20:1681636 Cmo20g00345 Cmo-Chr20:1689733 1.86E-109 proximal
Cmo20g00342 Cmo-Chr20:1675436 Cmo20g00343 Cmo-Chr20:1681636 1.98E-169 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00343 K00430 - csv:101204245 564.688