Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00352 ATGGCCACCGAGGCGACCGAAGCCTCGGCTAAGTTGAAGAGTCCGGATTTTCGCCCGGTACCGTCGCCTCCAGATTTCCATCCCGAGATTCTGGTCTCAGCTCATGATGGTCTTCGGTTCTGGCAGTTCATGATTGCTGGTTCAATCGCTGGGTCTGTTGAGCATATGGCTATGTTTCCGGTTGATACAGTCAAGACCCATATGCAAGCCCTTGGCTCTTGTCCAATTAAATCTGTTGGAGTTCGACAAGCGCTTCGGTCAATTTTGAAGACAGAGGGACCTGCTGGTTTTTATCGTGGTATTGGTGCTATGGGTCTTGGAGCTGGACCTGCACATGCTGTGTATTTTACAGTCTACGAGGATTGTAAGAAGTTTTTCTCTGGTGGGGATCCTAATAATTCTGTTGCCCACGCTGCTTCTGGCGTCTGTGCAACGGTGGCGAGTGACGCTGTTTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGAGTAATAGTCCCTACAAGGGGGTTTTGGATTGTGTCACAAGGGTCCTCAGAGACGAGGGGTTTAAAGCATTTTACGCATCATATAGAACTACAGTGTTAATGAATGCTCCATTTACTGCTGTGCATTTTGCTACTTATGAAGCTGCAAAGAGAGGTTTGCTGGAGGTTTCGCCAGAGATTGTAAATAATGAACAGTGGATCGTTCATGCGACGGCAGGAGCTGCTGCTGGAGCCTCAGCTGCATTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAACTACAATGTCAGGGTGTATGTGGCTGCGATAGATTCAAAAGCGGGTCGATAGAAGACGTCGTTAGGACAATACTCAAGAAGGACGGATATCGAGGGCTTATGAGGGGATGGGTTCCAAGGATGCTCTTTCACGCTCCGGCTGCTGCTATTTGCTGGTCGACATACGAAGCGATAAAATCTCTGTTCCAAGAGCTCAATGGCAGCAGTGACGAAATGACATGA 993 48.44 MATEATEASAKLKSPDFRPVPSPPDFHPEILVSAHDGLRFWQFMIAGSIAGSVEHMAMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKTEGPAGFYRGIGAMGLGAGPAHAVYFTVYEDCKKFFSGGDPNNSVAHAASGVCATVASDAVFTPMDMVKQRLQLSNSPYKGVLDCVTRVLRDEGFKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLLEVSPEIVNNEQWIVHATAGAAAGASAAFVTTPLDVVKTQLQCQGVCGCDRFKSGSIEDVVRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEAIKSLFQELNGSSDEMT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1733791 1737772 - CmoCh20G003520.1 Cmo20g00352 404669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00352 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Cmo20g00352 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Cmo20g00352 330 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 5 326 - -
Cmo20g00352 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Cmo20g00352 330 Gene3D Mitochondrial carrier domain 25 166 IPR023395 -
Cmo20g00352 330 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Cmo20g00352 330 Pfam Mitochondrial carrier protein 229 321 IPR018108 -
Cmo20g00352 330 Pfam Mitochondrial carrier protein 133 218 IPR018108 -
Cmo20g00352 330 Gene3D Mitochondrial carrier domain 167 330 IPR023395 -
Cmo20g00352 330 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Cmo20g00352 330 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Cmo20g00352 330 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Cmo20g00352 330 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Cmo20g00352 330 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Cmo20g00352 330 PANTHER MITOFERRIN-1-RELATED 5 326 - -
Cmo20g00352 330 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00725 Cmo20g00352 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00342 Cmo-Chr3:4487298 Cmo20g00352 Cmo-Chr20:1733791 5.56E-157 dispersed
Cmo07g01125 Cmo-Chr7:5926574 Cmo20g00352 Cmo-Chr20:1733791 4.22E-151 dispersed
Cmo15g00582 Cmo-Chr15:2799503 Cmo20g00352 Cmo-Chr20:1733791 4.86E-10 dispersed
Cmo02g00725 Cmo-Chr2:4581054 Cmo20g00352 Cmo-Chr20:1733791 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00352 K15113 - csv:101215924 617.461