Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00354 ATGGAAGCCAGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGCTGCACAAAGGACTGCATTTTTGCCCCATATTTCCCTCCCAATGACCCTCTCAAGTTTGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGTCTCAGTTGATCAGAGAGCGGATACTGTGAGTAGTATAGTATATGAAGCAAATGCTAGAATGCGAGATCCAGTGTACGGATGTGTAGGAATAATCTCATTTCTGCAAAATGAAGTGTCCCAATTGGAAATGCAACTAGCAGAAGTACATGCGGAGATCTTAAGCTTTCAGATGCAGCAACCAGTGGCTCCAATGACATTCCCGACAACCCAAATGGATCAGAGTTGCATGTTTGAACATTCAAGAAATTAA 411 45.26 MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1742608 1743104 + CmoCh20G003540.1 Cmo20g00354 404671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00354 136 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 130 - -
Cmo20g00354 136 Coils Coil 85 105 - -
Cmo20g00354 136 ProSiteProfiles LOB domain profile. 6 106 IPR004883 -
Cmo20g00354 136 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 130 - -
Cmo20g00354 136 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00129 Cmo-Chr4:659700 Cmo20g00354 Cmo-Chr20:1742608 4.31E-57 dispersed
Cmo04g01166 Cmo-Chr4:5949123 Cmo20g00354 Cmo-Chr20:1742608 1.34E-57 dispersed
Cmo20g00354 Cmo-Chr20:1742608 Cmo02g00023 Cmo-Chr2:137845 1.65E-48 dispersed
Cmo02g00726 Cmo-Chr2:4587924 Cmo20g00354 Cmo-Chr20:1742608 4.42E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11716 PF03195 LOB 1.60E-38 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00354 - - cmax:111484539 229.565