Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00354 | ATGGAAGCCAGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGCTGCACAAAGGACTGCATTTTTGCCCCATATTTCCCTCCCAATGACCCTCTCAAGTTTGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGTCTCAGTTGATCAGAGAGCGGATACTGTGAGTAGTATAGTATATGAAGCAAATGCTAGAATGCGAGATCCAGTGTACGGATGTGTAGGAATAATCTCATTTCTGCAAAATGAAGTGTCCCAATTGGAAATGCAACTAGCAGAAGTACATGCGGAGATCTTAAGCTTTCAGATGCAGCAACCAGTGGCTCCAATGACATTCCCGACAACCCAAATGGATCAGAGTTGCATGTTTGAACATTCAAGAAATTAA | 411 | 45.26 | MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN | 136 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 1742608 | 1743104 | + | CmoCh20G003540.1 | Cmo20g00354 | 404671 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00354 | 136 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 130 | - | - | |
Cmo20g00354 | 136 | Coils | Coil | 85 | 105 | - | - | |
Cmo20g00354 | 136 | ProSiteProfiles | LOB domain profile. | 6 | 106 | IPR004883 | - | |
Cmo20g00354 | 136 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 1 | 130 | - | - | |
Cmo20g00354 | 136 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 103 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00129 | Cmo-Chr4:659700 | Cmo20g00354 | Cmo-Chr20:1742608 | 4.31E-57 | dispersed | |
Cmo04g01166 | Cmo-Chr4:5949123 | Cmo20g00354 | Cmo-Chr20:1742608 | 1.34E-57 | dispersed | |
Cmo20g00354 | Cmo-Chr20:1742608 | Cmo02g00023 | Cmo-Chr2:137845 | 1.65E-48 | dispersed | |
Cmo02g00726 | Cmo-Chr2:4587924 | Cmo20g00354 | Cmo-Chr20:1742608 | 4.42E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11716 | PF03195 | LOB | 1.60E-38 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00354 | - | - | cmax:111484539 | 229.565 |