Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00367 ATGAACGGTGGATTTAAGCAAGGGAAATTGGGGCTTTGTTTGTCTGTTTTGCTGGAATTTTCAGCTACAGATGACCTTATTGGGTTTAGGAGTGCTGTTGAGGAACATGGTTATGATATTGATGAGGCAAGCTTGTGGTATGGGCGAAGTATTGGTTCAAAGAAGATGAGATATGAAGAAAGGACTCCTCTAATGGTTGCAGCCATGTTTGGGAGCTTGAATGTTCTGTCGTACATCGTTCATCGTGGTTGTGTCGATGTTAATCGGACTTGTGGCTCTGATGGCCCGACGGCGCTACATTGTGCTGTTGCTGGTGGTTCTGCTGTTTCGGATCAGGTTGTTGAACTCTTGCTTGATGCGTCGGCTGATGCGAGTGCTGTCGATGCGAATGGTAATCGGCCTAGTGACTTGATTGGTCGTGATTTTAGTTTAGCTTCTTATTCGAGGAGAAAGGTATTACAACAATTGCTCAATGGTTGGGTAGAAGATGGCCTTGGGTCGTCGGAGGCGATATTTTACGAGATGGAAACGCTGGAGCCGGTGGAGGCTTCGAGCTCTTGGGCTGCAAGAGATGGGATGGAGAAGAAAGAGTATCCAGTTGATCTCTCACTTCCTGATATCAAGAATGAAATGTATAGCACAGATGAGTTTAGGATGTATACTTTTAAGATCAAACCGTGTACGAGAGCTTACTCTCATGATTGGACGGAGTGTCCGTTTGTTCACCCCGGGGAGAACGCGAGGAGGCGGGATCTAAGGAAATACCATTACAGCTGCGTCCCGTGCCCGGAATTCAGAAAGGGAACATGTAGACAGGGCGATGCGTGTGAATATGCTCATGGAATTTTCGAATGTTGGCTGCATCCTGCTCAATACCGTACCCGTCTTTGCAAGGACGAAACTGGATGCACCCGAAAAGTTTGTTTCTTTGCTCACAAGCCAGAAGAGCTCCGCCCCTTGTATGCTTCAACGGGTTCTGCTGTACCGTCGCCAAGATCAATCTGTGGTTCTTCATTAGACATGGCGTCGATCAGCTCACTTACCCTCGGTTCTCCTTCAGCTTTGATGCCTTCTTCATCGACTCCGCCTTTAACTCCTACTGGAGTTTCTTCTCCAATGGGTGGAACCATGTGGCAGACTCAGCCTCCGACCTTGCAGCTTCCAGGTAGCAGGTTGAAGGCGTCTTTGAGCGCAAGAGACGTGGATTTAGATGTTGAGTTACTTTGTCTCGAAAGTCAGCGTCGTCGACAAAAGCAGTTGATCGAAGAGATATCGTGTCTACCTTCCCCTTCCAGATGGAACAATGGCTTGTCAACCACTGCATCTTTTCCATCCCCAAGGAGTAGTAGAAATGGGGAGTTGAATGGACTTGGAGGCATGAAGCCTACGAACCTCGAGGAGTTTTTCGGGTCGGTAGATCCCGCAATGTTGCCTCAATTACAAGGACTTTCACTGGATTCTATGGGAACTCAGGTACAATCCCCATCCGGGATCCAGATGCGCCAAAGCCTGAATCGGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGCTCCCCACCTGCAAGGTCGTCTCAACCATCCGTGTCTTCTGCAGCTAACGTTCTAGGTCCCAGGGGTGCGCTTTTCACCAACCGGAGCCAGAGCTTCATTGAACAGAATGCCATGCCTTCGAACCTATCGGATTGGGGTTCGCCCAATGGAAAGCTAGACTGGGGAATTCATGGAGAAGAACTCAACAAGCTAAGGAAATCTGCATCATATGGGTTTCAAGGCAGTTCTCTGGCAACGCCCACAATGCACGCTACCGCTCCCGAACCAGACGTGTCCTGGGTTCAGTCCTTAGTGAAGGATACTCCGAGCGAGAACTCGGTGCAGTTGAGCATGGATGAGCAGCAGAAACAGCAGCTTTGGCATCTTGACAATAGCGATTTGAAGCAAATGTACATGGAACAGGAGCAGCTAGTTGCTTGA 1971 48.91 MNGGFKQGKLGLCLSVLLEFSATDDLIGFRSAVEEHGYDIDEASLWYGRSIGSKKMRYEERTPLMVAAMFGSLNVLSYIVHRGCVDVNRTCGSDGPTALHCAVAGGSAVSDQVVELLLDASADASAVDANGNRPSDLIGRDFSLASYSRRKVLQQLLNGWVEDGLGSSEAIFYEMETLEPVEASSSWAARDGMEKKEYPVDLSLPDIKNEMYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDLRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVPSPRSICGSSLDMASISSLTLGSPSALMPSSSTPPLTPTGVSSPMGGTMWQTQPPTLQLPGSRLKASLSARDVDLDVELLCLESQRRRQKQLIEEISCLPSPSRWNNGLSTTASFPSPRSSRNGELNGLGGMKPTNLEEFFGSVDPAMLPQLQGLSLDSMGTQVQSPSGIQMRQSLNRSFLSSYANSIGSPPARSSQPSVSSAANVLGPRGALFTNRSQSFIEQNAMPSNLSDWGSPNGKLDWGIHGEELNKLRKSASYGFQGSSLATPTMHATAPEPDVSWVQSLVKDTPSENSVQLSMDEQQKQQLWHLDNSDLKQMYMEQEQLVA 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1811451 1813421 - CmoCh20G003670.1 Cmo20g00367 404684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00367 656 Pfam Ankyrin repeats (3 copies) 52 125 IPR002110 GO:0005515
Cmo20g00367 656 Gene3D - 257 319 - -
Cmo20g00367 656 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 13 654 - -
Cmo20g00367 656 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 281 IPR000571 GO:0046872
Cmo20g00367 656 PANTHER UNKEMPT FAMILY MEMBER 13 654 IPR045234 -
Cmo20g00367 656 SUPERFAMILY Ankyrin repeat 35 138 IPR036770 -
Cmo20g00367 656 SMART ANK_2a 59 89 IPR002110 GO:0005515
Cmo20g00367 656 SMART ANK_2a 94 126 IPR002110 GO:0005515
Cmo20g00367 656 MobiDBLite consensus disorder prediction 437 458 - -
Cmo20g00367 656 SMART c3hfinal6 256 282 IPR000571 GO:0046872
Cmo20g00367 656 SMART c3hfinal6 291 314 IPR000571 GO:0046872
Cmo20g00367 656 ProSiteProfiles Zinc finger C3H1-type profile. 261 283 IPR000571 GO:0046872
Cmo20g00367 656 ProSiteProfiles Ankyrin repeat profile. 94 129 IPR002110 GO:0005515
Cmo20g00367 656 ProSiteProfiles Ankyrin repeat region circular profile. 94 128 - -
Cmo20g00367 656 Gene3D - 31 157 IPR036770 -
Cmo20g00367 656 MobiDBLite consensus disorder prediction 437 452 - -
Cmo20g00367 656 MobiDBLite consensus disorder prediction 353 382 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00746 Cmo20g00367 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00148 Cmo-Chr4:775143 Cmo20g00367 Cmo-Chr20:1811451 0 dispersed
Cmo04g01178 Cmo-Chr4:6019943 Cmo20g00367 Cmo-Chr20:1811451 0 dispersed
Cmo14g01019 Cmo-Chr14:5542971 Cmo20g00367 Cmo-Chr20:1811451 5.09E-148 dispersed
Cmo20g00367 Cmo-Chr20:1811451 Cmo10g00717 Cmo-Chr10:3287572 2.95E-54 dispersed
Cmo02g00746 Cmo-Chr2:4682284 Cmo20g00367 Cmo-Chr20:1811451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11718 PF12796 Ank_2 6.30E-07 CL0465 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00367 - - csv:101213761 1062.75