Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00379 ATGCCAGCCATTACTCGAGGAAGTCACTGTAAGATTGAGAATGGAACGAAATTGGATGATGTCATGGTTGCGAGAGTGACTGATGCATCTGCTATGGAGAAAACTCCTCCCAAGCGGAAACTGAGATCCGGTGATGCGCAGAGACAACAAAGCCCTGTCTCTGAGCCGATGAATTGGAAATCGCCTCGACGGTGTCTCAATTCGAGTCCAAAGAGCGTTCCACATAGCGATGGGAAAACGTTTATTGATGGCTTTCCTAAATTACATATGTCGCCGATAAAATGCTTGTTCAAGAACCCCAGTGTCAAACCAGATTGGAATCCTAAAGATACCCAACATATAAAAACAGCAAAGGAAGCATTGCACGTATCGACCGCTCCAACTACAATCATGTGCCGCGAGGATGAACAGAGCAGAATCTTAAATTTCTGTAAGGCTTGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGAAAATCCTTGTCCATGGAAAAAGTGAAAGAGCAGTTGGCTGATTGGGTGAAAGAGTCAGGTCTTCAGCTGCCAGACATTTTGTCTATAAACTGCACTTCGTTAGCTAAGACGTCGGACATTTTCACTAAGATAATGGGGGAAGCCCAACCGCAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAAAGCTTGTACTCCCAAAAGGCAGAGTCATCTTGCACGAAGATGATGTTAATAATTGCCGACGAATTGGATTATTTAATTACAAAGGATAAGGCAGTGCTACATAATCTGTTCATGCTCACAACTTTCCCATTTTCAAGATGCATTTTGATAGGAATTGCAAATGCTATTGACTTGGCAGATCGTTTTCTTCCAAGACTTCAGGCATTGAATTGCAAACCTCCGGTCATAACTTATAGGGCTTATTCCAAGGAACAGATCCTCAAGATTCTTCATCAACGGTTAACTGTGCTTCCTTTCGTTGTCTTTCAGCCGCAAGCTTTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTATCTGGAGATATGAGAAAAGCTCTTTGTGTTTGCAGAAATGCCATTGAATTGTTAGAGGCGGAACATAAAGCATCCTCCAAGGAGGAGGACCATATAGCATGTGATGCTTCAGCACCTGAGATTGTTAAAAGTCGGGAGTCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCCTTATCCAAGACTTTTAAATCACCAGCAGTGGAAACCATACAATCTCTTCCTCAGCATCAACAGATTATTTTATGCTCTGTTGTGAAACTCGTTCGTGGAGGAAAGAAGGATACAACCATAGGAGAGGTAAACAAATCATACGTAGACATCTGCAAATCAACACTAATTCCGCCAGTGGGAACCTTAGAACTTTCAAACATGTTCACAGTGCTAAACGACCAGGGGCTCCTCAAACTCGGCCAGTCTCGAGACGATAAGACGAGGCGGGTGTTGCTGAAAGTCGACGAAGCTGACGTCACGTTCGCATTACAGGGAATACGGTTCTTTCGAAATTGCCTTACAGTAAATTAG 1566 43.55 MPAITRGSHCKIENGTKLDDVMVARVTDASAMEKTPPKRKLRSGDAQRQQSPVSEPMNWKSPRRCLNSSPKSVPHSDGKTFIDGFPKLHMSPIKCLFKNPSVKPDWNPKDTQHIKTAKEALHVSTAPTTIMCREDEQSRILNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKEQLADWVKESGLQLPDILSINCTSLAKTSDIFTKIMGEAQPQKKRNGSLTPLQHLQSLYSQKAESSCTKMMLIIADELDYLITKDKAVLHNLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPPVITYRAYSKEQILKILHQRLTVLPFVVFQPQALELCARKVAAVSGDMRKALCVCRNAIELLEAEHKASSKEEDHIACDASAPEIVKSRESQIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGEVNKSYVDICKSTLIPPVGTLELSNMFTVLNDQGLLKLGQSRDDKTRRVLLKVDEADVTFALQGIRFFRNCLTVN 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1859011 1864233 - CmoCh20G003790.1 Cmo20g00379 404696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00379 521 Pfam AAA lid domain 333 370 IPR041083 -
Cmo20g00379 521 Gene3D - 110 299 IPR027417 -
Cmo20g00379 521 Gene3D - 300 418 - -
Cmo20g00379 521 Gene3D - 419 509 IPR036388 -
Cmo20g00379 521 PIRSF Cdc6 5 521 IPR016314 GO:0006270|GO:0051301
Cmo20g00379 521 CDD AAA 136 296 - -
Cmo20g00379 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 370 IPR027417 -
Cmo20g00379 521 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 27 518 - -
Cmo20g00379 521 Pfam CDC6, C terminal winged helix domain 429 507 IPR015163 -
Cmo20g00379 521 SMART AAA_5 152 302 IPR003593 -
Cmo20g00379 521 CDD Cdc6_C 422 504 IPR015163 -
Cmo20g00379 521 MobiDBLite consensus disorder prediction 28 78 - -
Cmo20g00379 521 MobiDBLite consensus disorder prediction 46 75 - -
Cmo20g00379 521 Pfam AAA domain 151 271 IPR003593 -
Cmo20g00379 521 SUPERFAMILY Winged helix DNA-binding domain 415 517 IPR036390 -
Cmo20g00379 521 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 27 518 - -
Cmo20g00379 521 SMART Cdc6_C_2 429 508 IPR015163 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01339 Cmo-Chr9:12131542 Cmo20g00379 Cmo-Chr20:1859011 3.44E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00379 K02213 - csv:101205741 824.313