Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00383 ATGGCCCCCACCGCCGGATCTCTCTGCAACAAATTCCTCGCTCTTTTACTGCTTATTGTTCATGTTGGTTGCTTCCTTCTCACTACCGCCGACCACCGCCGCCGCCGCCGTCCCTCGCCCCCCAAGAAAGCCACTCCGACGCCCTCCTGTCTTAAGCCCCACAAGGCTCTGACAAGTTCCTATTCATTTCTCAAACGAATCTTCTCCTCAAAAACCTGCAAAATGGCAATCGAAACCGCTCGCCCCCCCACTCCTGCCCGGACATCACAGGAGATTTCTCCCCCGCTTGAGACTCCGACAGCCGGAACGCCGCAGGATTCAGACATCACCACGGCGGAGACTAACCAATTTGTCCACCTCAGCAACGACATTTTCCCTTGCACTGCTTGCGGCGAGATTTTCCCCAAGCATCAATTGCTCGAACAGCACCAATCGGCGAAACATGCTGTGTCGGAACTCGCCGATTCCGATTCCGGGAAGAATATTGTTCGAATCATTTTCGAAACGGGATGGACGAGGAAAGAAAAAAGTCCGAAAATCGTTCGAATCTTGAAAATCCACAATAGCCCAAAGATCGTTTCCAGATTCGAGGAGTACAGAGAGTCGGTGAAGGCGAAAGCGGCGGCCCGAAACGGCGCGGTGAAGCGTCGGGACGAGCGGTGCATCGCCGACGGAAACGAGTTGCTGAGGTTTCACTGTGCGACGTTTTTATGCGATTTGGGGCAAAATGGTAATTCCAGCCTCTGCGGGCAGCAATTTTGTAGCATTTGTGGGATAATCAAATCGGGATTCTCCCACAAGTTGGACGGAATATCGACGTTATCGAGTAGCTGGAGGGCACACGTGGCGATCCCTGAGGACATCGAAGAGGAGTTCAAGTTTCTGAACGTGAAGCGGGCGATTCTGGTTTGTCGGGTCATTGCAGGTCGGGTCGGGTCAGACGCCGATGAGCCGGAAAAAGACGGCGAAGGGTTTCACTCCGTCGTCGGGAGGAGTGGTAGTGGGGCCCAGTCCACGTTGGATGAGGAAGAGCTGTTGGTTTTCAATCCGAGGGCTGTGCTCCCCTGCTTCGCGATCGTATACGAAATCTGA 1092 54.03 MAPTAGSLCNKFLALLLLIVHVGCFLLTTADHRRRRRPSPPKKATPTPSCLKPHKALTSSYSFLKRIFSSKTCKMAIETARPPTPARTSQEISPPLETPTAGTPQDSDITTAETNQFVHLSNDIFPCTACGEIFPKHQLLEQHQSAKHAVSELADSDSGKNIVRIIFETGWTRKEKSPKIVRILKIHNSPKIVSRFEEYRESVKAKAAARNGAVKRRDERCIADGNELLRFHCATFLCDLGQNGNSSLCGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFLNVKRAILVCRVIAGRVGSDADEPEKDGEGFHSVVGRSGSGAQSTLDEEELLVFNPRAVLPCFAIVYEI 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1870489 1871580 - CmoCh20G003830.1 Cmo20g00383 404700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00383 363 ProSitePatterns Zinc finger C2H2 type domain signature. 127 148 IPR013087 -
Cmo20g00383 363 PANTHER NUCLEIC ACID BINDING PROTEIN 5 361 - -
Cmo20g00383 363 MobiDBLite consensus disorder prediction 32 53 - -
Cmo20g00383 363 Gene3D - 167 363 - -
Cmo20g00383 363 MobiDBLite consensus disorder prediction 80 108 - -
Cmo20g00383 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 153 IPR013087 -
Cmo20g00383 363 MobiDBLite consensus disorder prediction 83 108 - -
Cmo20g00383 363 SUPERFAMILY ADP-ribosylation 151 362 - -
Cmo20g00383 363 MobiDBLite consensus disorder prediction 315 335 - -
Cmo20g00383 363 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00873 Cmo-Chr16:4681672 Cmo20g00383 Cmo-Chr20:1870489 4.82E-52 dispersed
Cmo02g00760 Cmo-Chr2:4756462 Cmo20g00383 Cmo-Chr20:1870489 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11719 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00383 - - csv:101205506 570.852