Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00433 ATGGCCATTAATATTCCTCTCTGTATTGCTTCTTTTCTCTCTTTTTTTTTACTGGTGGAAGCCAGAATCCCCGGAATTTACTCCGGCGGCCCATGGCAGAGCGCTCACGCCACCTTCTACGGTGGCTCCGATGCTTCCGGCACAATGGGCGGCGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTATGGAGTGAACACGGCGGCGCTGAGTACGGCTCTTTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGACCCACGGTGGTGCCATTCCGGCAGCCCGTCGATTTTGATTACCGCTACTAATTTCTGCCCGCCGAATTATGCGCTGCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGTACCCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCCGAGTACCGCGCCGGTATCGTCCCCGTGTCTTACCGCCGAGTGCCATGCCGGAAGCACGGAGGAATCAGGTTCACAATCAACGGCTTTCGTTACTTCAATCTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTACGGGTTAGCGTTAAAGGAACAAGAACCGGGTGGATGAGCATGACACGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTATTAGTGGGCCAAGCTCTGTCGTTTAGAGTAACCGGCAGCGACCGTCGAACCTCAACGTCATGGAACATCGTTCCCGCCCATTGGCAGTTCGGCCAAACTTTCACCGGGAAAAACTTTCGTGTTTAA 777 53.54 MAINIPLCIASFLSFFLLVEARIPGIYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKHGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2031500 2032455 + CmoCh20G004330.1 Cmo20g00433 404750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00433 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cmo20g00433 258 PANTHER EXPANSIN 7 257 - -
Cmo20g00433 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Cmo20g00433 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cmo20g00433 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cmo20g00433 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cmo20g00433 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cmo20g00433 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cmo20g00433 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cmo20g00433 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cmo20g00433 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cmo20g00433 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cmo20g00433 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cmo20g00433 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cmo20g00433 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cmo20g00433 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cmo20g00433 258 Gene3D - 164 256 IPR036749 -
Cmo20g00433 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cmo20g00433 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cmo20g00433 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cmo20g00433 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cmo20g00433 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cmo20g00433 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cmo20g00433 258 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Cmo20g00433 258 SMART dpbb_1 67 154 IPR007112 -
Cmo20g00433 258 Gene3D - 22 160 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00120 Cmo20g00433 CCT
Cmo13g00120 Cmo20g00433 ECH
Cmo02g00797 Cmo20g00433 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00212 Cmo-Chr4:1058051 Cmo20g00433 Cmo-Chr20:2031500 8.84E-65 dispersed
Cmo19g00834 Cmo-Chr19:8165813 Cmo20g00433 Cmo-Chr20:2031500 3.01E-88 dispersed
Cmo20g00433 Cmo-Chr20:2031500 Cmo04g01748 Cmo-Chr4:8826880 3.00E-127 dispersed
Cmo01g00634 Cmo-Chr1:3246744 Cmo20g00433 Cmo-Chr20:2031500 8.84E-171 wgd
Cmo13g00120 Cmo-Chr13:694183 Cmo20g00433 Cmo-Chr20:2031500 7.51E-157 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo20g00433 Cmo-Chr20:2031500 1.06E-180 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo03g00435 Cmo-Chr3:4977128 2.41E-169 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo04g01251 Cmo-Chr4:6347642 9.08E-139 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo04g00211 Cmo-Chr4:1056541 4.95E-95 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo04g02778 Cmo-Chr4:20041108 1.01E-136 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo07g01042 Cmo-Chr7:5279087 6.78E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00433 - - csv:101203979 523.472