Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00446 ATGGGTAACGGGATTGGGAAGCTCGGCGGTTGCTTTGCCGGAATCGACGACGGTAAGCGGCGGCCGGATATTTCCGTTCTGATATCGAATCCACTAGATGAAGGATTAGGGCACTCGTTCTGCTATGTCCGGCCGGATCCCTCGAGGCTTTCGTCGTCAAAAGTTCATTCCGACGAAACCACCACTTTCCGATCAATTTCCGGCGCCGCTGTGAGTGCCAATACATCGACGCCTCTTTCTACGTCTCTTCTTGATCTGTATTCATACAGTAGCATTGATAGAGCGCCGGCTTTTGAAAGTTCGAATTCTTTCGCTTCAATCCCTTTGCAGCCAATCCCTAGAAATATGATCAATTCGGGTCCAATTTCGGGTCCTATTTCGGGGCATTTGGAAAGAGGGTTTTTATCGGGTCCAATTGAGCGAGGGTTTATGTCGGGTCCATTGGATAAAGGGATTTTTTCTGGTCCGCTCGATAATTCTTCATCCACTGAATTTCAGAGGAGTTTTTCTCATGGAGGCGGGTTTAATTCCAGATCTAGATCCAGAAAAAGCCGGTTGATTCGGATTCTTAGAAGCGCAATTCCGAAATCGATTTATCGAGGGAAGAATTCCATTGTGGCTCCGATTAAAGCGGTGAAAGAACCCGATTGGATCGTCATGCCCGAGAAACATAATGAGAATTTGACGGTGAGTAGTTTGAATTTCAGTAGCGAGGGGAGTTTGGAAGATGATGAATCAATGCAGAGCCAAAATCTGCAGTGGGCGCAAGGAAAAGCAGGGGAAGATCGAGTTCATGTCGTAGTTTCTGAAGAACATGGATGGGTTTTCGTTGGGATTTATGATGGATTTAACGGTCCTGATGCTCCTGATTACCTCTTATCGAATTTATACTCCTCTGTTCATAAAGAGCTCAAAGGTTTGTTATGGGACGAAAACCTCGATTTGGCTGGCGTCCCCGCTCCGGTCACTTCGCCGGTTAATCGGACGGGTGATGCTTGTTCTCGGTGTGTAGAACAAGAGAATCATCCTTCAAGAAGAAGAAAAGGTAAGAATTCAAGAGGCAAATTTAGAGGAGCGGCTGAGAAGTGGGAGGATAATCAGCGGCGGTGGAAATGCGAATGGGATCAGGAAAGATTAGAACTCGATCGGAGATTAAAGGAGCAGTTGAATCGATCTGAATCGAACGGATCGAGATCGATTAATCATTCGGATGTTCTTAAAGCTCTGTCCCAGGCATTGAAGAACACAGAAGAGGCCTATTTGGATATTGCAGACAAGGTGCTCGATGAAAATCCTGAACTAGCTTTGATGGGCTCTTGTGTTCTTGTGATGCTTATGAAGGGAGATGATGTTTATGTGATGAATGTCGGCGACAGTCGAGCTGTTTTAGCGCAGAAGGCCGATCCCGATTACTGGCTCGGGATGATTCGACAGGATTTGGAGAGGATTAGTGAAGAGCCAGTTCATGACATTGATGCAGCATTCAAGCCTGCTAACCTTGCTGCTTTTCAGCTTTCCATGGATCATAGTACCAATGTTCATGAGGAAGTTCGACGAATAAAAAACGAACACCCTGATGATGCCGGTGCCGTAATGAACGACCGTGTGAAAGGCTCGTTGAAGGTCACTCGGGCGTTCGGTGCTGGTTTCCTCAAACAGCCAAAATGGAACAATGCATTGTTGGAGATGTTCAGAATAGACTACGTAGGGAGATTGCCATACATCAGTTGTCAGCCATGTCTCTACCACCACAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCTGATGGACTCTACCAGTACTTCACAAACGAAGAAGCTGTTTCCGAGGTCGAGCTTTTCATTACGTTACAACCTGAAGGCGACCCGGCTCAACATCTGATTGAATTACTGCTGTTTCGAGCTGCAAAGCGAGCTGGTATGGATTTCCACGAGCTGCTCGAAATACCGCAGGGGGACCGGAGGAAGTACCACGACGATGTGTCGATCATTGTGATTTCATTAGAAGGGAGGATCTGGAGATCCTGTGTATAA 2040 46.57 MGNGIGKLGGCFAGIDDGKRRPDISVLISNPLDEGLGHSFCYVRPDPSRLSSSKVHSDETTTFRSISGAAVSANTSTPLSTSLLDLYSYSSIDRAPAFESSNSFASIPLQPIPRNMINSGPISGPISGHLERGFLSGPIERGFMSGPLDKGIFSGPLDNSSSTEFQRSFSHGGGFNSRSRSRKSRLIRILRSAIPKSIYRGKNSIVAPIKAVKEPDWIVMPEKHNENLTVSSLNFSSEGSLEDDESMQSQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDENLDLAGVPAPVTSPVNRTGDACSRCVEQENHPSRRRKGKNSRGKFRGAAEKWEDNQRRWKCEWDQERLELDRRLKEQLNRSESNGSRSINHSDVLKALSQALKNTEEAYLDIADKVLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKADPDYWLGMIRQDLERISEEPVHDIDAAFKPANLAAFQLSMDHSTNVHEEVRRIKNEHPDDAGAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRLPYISCQPCLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLIELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2072912 2076037 + CmoCh20G004460.1 Cmo20g00446 404763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00446 679 PANTHER - 12 679 - -
Cmo20g00446 679 SUPERFAMILY PP2C-like 258 671 IPR036457 -
Cmo20g00446 679 SMART PP2C_4 245 668 IPR001932 -
Cmo20g00446 679 Pfam Protein phosphatase 2C 399 620 IPR001932 -
Cmo20g00446 679 ProSiteProfiles PPM-type phosphatase domain profile. 244 670 IPR001932 -
Cmo20g00446 679 Coils Coil 406 426 - -
Cmo20g00446 679 CDD PP2Cc 381 670 IPR001932 -
Cmo20g00446 679 PANTHER PROTEIN PHOSPHATASE 2C 12 679 IPR015655 GO:0004722|GO:0006470
Cmo20g00446 679 Gene3D - 220 675 IPR036457 -
Cmo20g00446 679 MobiDBLite consensus disorder prediction 337 360 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00805 Cmo20g00446 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00871 Cmo-Chr6:4968977 Cmo20g00446 Cmo-Chr20:2072912 1.02E-46 dispersed
Cmo06g01492 Cmo-Chr6:10725568 Cmo20g00446 Cmo-Chr20:2072912 1.67E-78 dispersed
Cmo14g01659 Cmo-Chr14:13103837 Cmo20g00446 Cmo-Chr20:2072912 3.88E-74 dispersed
Cmo16g01120 Cmo-Chr16:7922076 Cmo20g00446 Cmo-Chr20:2072912 1.17E-47 dispersed
Cmo20g00446 Cmo-Chr20:2072912 Cmo03g00683 Cmo-Chr3:6014543 3.25E-40 dispersed
Cmo02g00805 Cmo-Chr2:4953061 Cmo20g00446 Cmo-Chr20:2072912 0 wgd
Cmo20g00446 Cmo-Chr20:2072912 Cmo03g00439 Cmo-Chr3:4997810 0 wgd
Cmo20g00446 Cmo-Chr20:2072912 Cmo07g01039 Cmo-Chr7:5258432 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00446 - - cmax:111484437 1292.72