Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00447 ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACCGGTGTGATGGTCGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACTTTGAAATATCCCATAGAGCATGGTATAGTGAGTAATTGGGATGACATGGAGAAAATTTGGCATCATACCTTCTACAATGAACTCCGAGTGGCTCCAGAAGAGCACCCTGTCCTACTCACTGAAGCACCTCTTAACCCAAAAGCAAACCGTGAAAAAATGACCCAAATTATGTTCGAGACCTTCAACACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTTATGGATTCTGGAGACGGTGTCAGTCACACAGTCCCAATTTACGAGGGGTATGCTCTCCCCCATGCCATACTCCGTCTTGACCTTGCTGGCCGTGACCTCACTGATGGCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCTCAGCTGAGCGAGAAATTGTGAGGGACATGAAGGAAAAACTAGCATATATTGCCCTCGACTATGAGCAAGAACTTGAAACTTCCAAAAATGCTTCATCTGTCGAGAAGAGCTATGAACTTCCCGATGGGCAAGTTATCACAATTGGTGCAGAACGTTTCCGATGCCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCATGAAACAACGTATAACTCCATCATGAAATGTGATGTTGACATCAGAAAGGATCTGTATGGGAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATAGCTGCATTAGCTCCAAGCAGCATGAAAATAAAGGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCACTTAGCACGTTTCAACAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATTGTGCACAGGAAATGCTTCTGA 1134 46.21 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKNASSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIAALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2077075 2079574 - CmoCh20G004470.1 Cmo20g00447 404764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00447 377 Gene3D - 140 340 - -
Cmo20g00447 377 PANTHER ACTIN 1 376 IPR004000 -
Cmo20g00447 377 PANTHER ACTIN-97 1 376 - -
Cmo20g00447 377 PRINTS Actin signature 28 37 IPR004000 -
Cmo20g00447 377 PRINTS Actin signature 51 62 IPR004000 -
Cmo20g00447 377 PRINTS Actin signature 63 85 IPR004000 -
Cmo20g00447 377 PRINTS Actin signature 117 130 IPR004000 -
Cmo20g00447 377 PRINTS Actin signature 142 161 IPR004000 -
Cmo20g00447 377 PRINTS Actin signature 238 254 IPR004000 -
Cmo20g00447 377 SMART actin_3 7 377 IPR004000 -
Cmo20g00447 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmo20g00447 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Cmo20g00447 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmo20g00447 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmo20g00447 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmo20g00447 377 Gene3D - 10 371 - -
Cmo20g00447 377 Pfam Actin 5 377 IPR004000 -
Cmo20g00447 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmo20g00447 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00807 Cmo20g00447 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00397 Cmo-Chr15:1826838 Cmo20g00447 Cmo-Chr20:2077075 0 dispersed
Cmo20g00447 Cmo-Chr20:2077075 Cmo02g00620 Cmo-Chr2:3851300 0 dispersed
Cmo02g00807 Cmo-Chr2:4963969 Cmo20g00447 Cmo-Chr20:2077075 0 wgd
Cmo20g00447 Cmo-Chr20:2077075 Cmo04g02766 Cmo-Chr4:19981604 0 wgd
Cmo20g00447 Cmo-Chr20:2077075 Cmo07g01037 Cmo-Chr7:5240682 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00447 K10355 - csin:114318813 748.814