Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00451 ATGGCTCACTCTTCCCTTCCAATCTTCTTAGATCCTCCAAATTGGCAACAGCCACCTTCAACAAATGATAATCATCAAGACCCACGTCAACTTCCGGCGTTTTTACCACCGCCGCCGCCGCCTCCGCCGTCTACGGCAGCTCAAGGAGGCGGAATTCGGCCGGGTTCTATGGCGTATAGAGCGCGGTTGGCGATGTTACCGCAGCCAGAGGCACTGAAATGCCCTCGTTGTGATTCTACAAACACTAAATTTTGCTATTTCAATAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCCTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAATGTCCCCGTCGGTGGAGGGTTCCGTAAGAACAAGAAGAAGAAGAAATCTAACCCTCCTAAGTCCCCCACTGCCTCTCAACCTGAAATGGGTAATTCGAGACCAATAATGTCGAGGAGCTGCAACATTGAGAGCAGCAGTACAATGAGCCACTTCCCACCGTCATTTCCATCTCTCCACCACCATATTTCCCGTTTTGGAGCTGCTGCAAACAGCTCAGCCGTGAACTTCGCCGGAACTCACATGAATTCCGGCAGGGAAATGGAGCAATGGCAGCGATCTCAACAACAGCAGCCATTCTTCGTCGCTGGACTCGAACCTCCGGCCGCCACCGCCACTGCATTCCCACAAAACTTCCAAACAGAAGGCGGCAGCAACAACAACAACTTCGGCGGTAACCACCTAACACAATCTGGTGGTTTACACTATAACTGTCATCAACAGCTTCAGAATGTGACACCCTTTTCGAGGATTCCGATGAAAAATGAAGAACAAGGAATATTATCGAACTTGTTACGACAAGATCAAAACGGGGAGTTTTGGGGAGGTGACCATCAAAATTCATGGACGGATTTGTCGGCGCTTAGCTCTTCTTCAAGCAGCCATCTTTTGTAA 954 50.42 MAHSSLPIFLDPPNWQQPPSTNDNHQDPRQLPAFLPPPPPPPPSTAAQGGGIRPGSMAYRARLAMLPQPEALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPPKSPTASQPEMGNSRPIMSRSCNIESSSTMSHFPPSFPSLHHHISRFGAAANSSAVNFAGTHMNSGREMEQWQRSQQQQPFFVAGLEPPAATATAFPQNFQTEGGSNNNNFGGNHLTQSGGLHYNCHQQLQNVTPFSRIPMKNEEQGILSNLLRQDQNGEFWGGDHQNSWTDLSALSSSSSSHLL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2102972 2104848 - CmoCh20G004510.1 Cmo20g00451 404768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00451 317 MobiDBLite consensus disorder prediction 133 152 - -
Cmo20g00451 317 MobiDBLite consensus disorder prediction 113 152 - -
Cmo20g00451 317 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 11 313 - -
Cmo20g00451 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 313 IPR045174 GO:0003700|GO:0006355
Cmo20g00451 317 MobiDBLite consensus disorder prediction 1 54 - -
Cmo20g00451 317 MobiDBLite consensus disorder prediction 31 47 - -
Cmo20g00451 317 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Cmo20g00451 317 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Cmo20g00451 317 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00132 Cmo20g00451 CCT
Cmo13g00132 Cmo20g00451 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00409 Cmo-Chr15:1861731 Cmo20g00451 Cmo-Chr20:2102972 2.22E-44 dispersed
Cmo01g00618 Cmo-Chr1:3189631 Cmo20g00451 Cmo-Chr20:2102972 1.70E-50 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo20g00451 Cmo-Chr20:2102972 6.93E-46 wgd
Cmo14g00147 Cmo-Chr14:642536 Cmo20g00451 Cmo-Chr20:2102972 7.71E-42 wgd
Cmo02g00815 Cmo-Chr2:4986104 Cmo20g00451 Cmo-Chr20:2102972 1.36E-89 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo03g00443 Cmo-Chr3:5025083 1.36E-43 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo04g01262 Cmo-Chr4:6404620 5.14E-51 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo04g00221 Cmo-Chr4:1111117 2.63E-45 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo04g02761 Cmo-Chr4:19969703 5.82E-47 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo06g00304 Cmo-Chr6:1499655 4.20E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11723 PF02701 zf-Dof 5.70E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00451 - - cpep:111794468 342.428