Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00472 ATGAGTACTGCCATGGAGAGGCTTCAGAAGGAGTTTTCCCAGATTTTGTCGGTCAATCGTGAGTATTTGTATCCGGAATCGGTTTCTAGAGAATCGTCGATGACGATATCGGCCAGATCGAGTGTTTCTGATTTTGAACTGAAGACAGAAGATGAGTTCGGAATTGCTAAAGAATCTATTTCTGAGGTTGAGCGAGTTTCTATGTCGGCCATGGCGGATTTGAAAGCAATTGCGGACTGTATGATATCCACCGGCTATGGAAAAGAATGTGTCAAGATTTATAAAACTGTGAGGAAATCGGTAATAGGCGAGAGTCTCTACAATCTAGGGATTGAGAAATTGAGTTTTTCGAAAGTTCAGAAGATGGATTGGGATGTTCTAGAGATCAAAATAAAAAGCTGGTTTAAAGGCGTGAAAACCGCATTGAAGTCTCTGTTCAAAGGAGAGAAAATCCTTTGCGATCATGTTTTCTCGGCTTCCCTTCCCATCAGAGAATCATGCTTCGCTCAAATTTGTAAAGCCGGTGCAACGACTCTGTTTGGATTCCCAGAATTAGTTGCCAAATACAAAAAATCTCCGGAGAAAATTTTCATTACACTAGACCTATACGAAGCCATAGCCGACCTCTGTCCGGAGATAAATTGCATTTTCTCATCCACAGCATCATCCAACGTACAATCACAAGCCGTCAGTACACTAGTCAAACTCGGAGAAAACATTGGCACATTAATCACTGACTTCGAATCGTCTATTCAGAAAGAATCATCGAAGAAACCGGTTCCTAGAGGCGGAGTTCATCCGCTCACTAGCTACGTGATGAACTATATTTCGTTCCTCTCCGATTACAGGGGAGTACTCAACGACATTTTAGCCGATTGGCCTTTACCAACAAAATTACCAATGCCAGAATCATACTACGGAACATTTAAGGAAGAAGATAGTCCGATTACCTTACGTTTCGCTTGGCTGATTCTTGTCCTCCTATGTAAACTCGACGGCAAAGCCGAGCATTACAACAACGTCGCTCTCTCCTACTTGTTCTTGGCCAACAATCTCCAATACATCGTCAACAAAGTTCGCACCTCAAATCTGCGATTCGTCCTCGGCGGCGACTGGATTGAGAAGCACGAATCGAAGATCAAACTGTACTCCTCCAAGTACAGGCGCATTGGATGGAGTGAAGTGATCTCGACGCTGCCGGCGGACGTAAAAGCGGAAATCTCACCGGAGGAAGCAAGTGAATCATTCAGAAATTTCGACAGAGCTTTTAAAGAAACTTGCAGAAAACAGACCTCCTGGATAGTGCCCGATCAAAAGCTCCGTGATGAAATAAGAATCTCGGTGGCAAAGGAACTTGGAGCTTTATACGGCAAGTTTTACGCGGAGAACCGGGTTCGTACTGAGCGGGTTTCTGAGTCGGATCCGCTCGTGAGTGCTCATGATTTGATGAGCACTGCCATGGAGAGGCTTCAGAAGGAGTTTTTCCAGATTTTGTCGGTTAATCGTGAGTATTTGTATTCGGAATCGGTTTCTAGCGTCCAATCGCCGATGACGATATCGGTCAGATCGAGTGTTTCTGATTTTGAACTGGAGACAGAAGATGAGTTCGGCATTGCTAACGAATCTATTTCTGAGGTTGAGCGAGTTTCTATGTCGGCCATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCCACCGGCTATGGAAAAGAATGCGTCAAGGTTTATAAAACTGTGAGGAAATCGATAATTGACGAGAGTCTCTACAACCTTGGTATTCAGAAATTGAGTTTTTCGAAAGTTCAGAAGATGCATTGGGAAGTTCTAGAGAGCAAAATAAAAACCTGGTTGAAAGGCGTGAAAACCGCAGTGAAATCTCTGTTCGAACAAGAGAGAATCCTTTGCGATCATGTTTTCTCGGCTTCCCTTCCCATCAGAGAATCATGCTTCGCTCAAATTTCTAAAGACGGTGCAACGATTCTGTTTGGATTCCCAGAATTAGTTGCCAAATACAAAAAATCTCCGGAGAAAATTTTCATTACACTAGACCTATACGAAGCCATAGCCGACCTCTGGACGGAGATCAAATACATTTTCTCATCCACAGCATCATCCAATGTGCAATCACAAGTCGTCAGTTCACAAATCAAACTCGGAGAAAACATTCGCACATTAATCACTGACTTCGAAATGTCTATTCAGAAAGAATCATCGAAAAAACCTGTTCCTAGAGGCGGAGTTCATCCACTCACTAGCTACGTGATGAACTATATTTTGTTCCTCTCCGATTATAGTAGAATACTCAACGACATTTTAGCCGATTGGCCTTTACCAGAAAAACTATCAATGCCAGAATCATACTACGGAACGCCTAAGGAAGAAGATAGTCCGATTACCTTACGTTTCGCTTGGTTGATTCTTGTCCTCCTATGCAAACTCGACGGCAAAGGCGAGCAATACAACGACGTCGCTCTCTCCTACTTGTTCTTGGCCAACAATCTCCAGTACATCGTCAACAAAGTTCGCACCTCAAATCTGAGATTCCTCCTCGGCGGCGACTGGATTGAGAGGCACGAATCGAGGATCAAATTGTACGCCTCCAAGTACGGTCGCATTGGATGGAATGGAGTATTCTCGTCGCTGCCGGCGGACGTAAAGGCAGAAATCTCACCGGAGGAAGCAAGAGAATCATTCAGAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAGACCTCCTGGGTCGTGCCCGATCAGAAGCTCCGTGATGAAATAAAAATCTCGTTGTCAAAGGAACTTGGAGCTTTATACGGCGAGTTTTACGCGAGGAACCGGGTTCGTACTAGGCGGGTTTCTGAGTCGGATCCGGTAGTCCCACTATCCCCTGATGATTTGAGTAATTACTTTTCGGATCTGTTTTACAGGTCTTGA 2937 44.02 MSTAMERLQKEFSQILSVNREYLYPESVSRESSMTISARSSVSDFELKTEDEFGIAKESISEVERVSMSAMADLKAIADCMISTGYGKECVKIYKTVRKSVIGESLYNLGIEKLSFSKVQKMDWDVLEIKIKSWFKGVKTALKSLFKGEKILCDHVFSASLPIRESCFAQICKAGATTLFGFPELVAKYKKSPEKIFITLDLYEAIADLCPEINCIFSSTASSNVQSQAVSTLVKLGENIGTLITDFESSIQKESSKKPVPRGGVHPLTSYVMNYISFLSDYRGVLNDILADWPLPTKLPMPESYYGTFKEEDSPITLRFAWLILVLLCKLDGKAEHYNNVALSYLFLANNLQYIVNKVRTSNLRFVLGGDWIEKHESKIKLYSSKYRRIGWSEVISTLPADVKAEISPEEASESFRNFDRAFKETCRKQTSWIVPDQKLRDEIRISVAKELGALYGKFYAENRVRTERVSESDPLVSAHDLMSTAMERLQKEFFQILSVNREYLYSESVSSVQSPMTISVRSSVSDFELETEDEFGIANESISEVERVSMSAMADLKAIADCMISTGYGKECVKVYKTVRKSIIDESLYNLGIQKLSFSKVQKMHWEVLESKIKTWLKGVKTAVKSLFEQERILCDHVFSASLPIRESCFAQISKDGATILFGFPELVAKYKKSPEKIFITLDLYEAIADLWTEIKYIFSSTASSNVQSQVVSSQIKLGENIRTLITDFEMSIQKESSKKPVPRGGVHPLTSYVMNYILFLSDYSRILNDILADWPLPEKLSMPESYYGTPKEEDSPITLRFAWLILVLLCKLDGKGEQYNDVALSYLFLANNLQYIVNKVRTSNLRFLLGGDWIERHESRIKLYASKYGRIGWNGVFSSLPADVKAEISPEEARESFRNFNRAFEETYRKQTSWVVPDQKLRDEIKISLSKELGALYGEFYARNRVRTRRVSESDPVVPLSPDDLSNYFSDLFYRS 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2180937 2187757 + CmoCh20G004720.1 Cmo20g00472 404789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00472 978 Gene3D Exocyst complex component Exo70 471 976 - -
Cmo20g00472 978 SUPERFAMILY Cullin repeat-like 1 464 IPR016159 -
Cmo20g00472 978 Gene3D Exocyst complex component Exo70 1 470 - -
Cmo20g00472 978 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 464 IPR004140 GO:0000145|GO:0006887
Cmo20g00472 978 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 1 464 - -
Cmo20g00472 978 Pfam Exo70 exocyst complex subunit 132 464 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmo20g00472 978 Pfam Exo70 exocyst complex subunit 616 972 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmo20g00472 978 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 468 977 - -
Cmo20g00472 978 PANTHER EXOCYST COMPLEX PROTEIN EXO70 468 977 IPR004140 GO:0000145|GO:0006887
Cmo20g00472 978 SUPERFAMILY Cullin repeat-like 466 975 IPR016159 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00840 Cmo20g00472 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00162 Cmo-Chr13:1042791 Cmo20g00472 Cmo-Chr20:2180937 0 dispersed
Cmo20g00472 Cmo-Chr20:2180937 Cmo14g01223 Cmo-Chr14:10395134 5.39E-89 dispersed
Cmo14g00163 Cmo-Chr14:726507 Cmo20g00472 Cmo-Chr20:2180937 1.48E-173 wgd
Cmo02g00840 Cmo-Chr2:5099790 Cmo20g00472 Cmo-Chr20:2180937 0 wgd
Cmo20g00472 Cmo-Chr20:2180937 Cmo04g01289 Cmo-Chr4:6535475 3.23E-142 wgd
Cmo20g00472 Cmo-Chr20:2180937 Cmo07g01009 Cmo-Chr7:4983705 2.65E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00472 K07195 - csv:101212978 846.269