Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00472 ATGAGTACTGCCATGGAGAGGCTTCAGAAGGAGTTTTCCCAGATTTTGTCGGTCAATCGTGAGTATTTGTATCCGGAATCGGTTTCTAGAGAATCGTCGATGACGATATCGGCCAGATCGAGTGTTTCTGATTTTGAACTGAAGACAGAAGATGAGTTCGGAATTGCTAAAGAATCTATTTCTGAGGTTGAGCGAGTTTCTATGTCGGCCATGGCGGATTTGAAAGCAATTGCGGACTGTATGATATCCACCGGCTATGGAAAAGAATGTGTCAAGATTTATAAAACTGTGAGGAAATCGGTAATAGGCGAGAGTCTCTACAATCTAGGGATTGAGAAATTGAGTTTTTCGAAAGTTCAGAAGATGGATTGGGATGTTCTAGAGATCAAAATAAAAAGCTGGTTTAAAGGCGTGAAAACCGCATTGAAGTCTCTGTTCAAAGGAGAGAAAATCCTTTGCGATCATGTTTTCTCGGCTTCCCTTCCCATCAGAGAATCATGCTTCGCTCAAATTTGTAAAGCCGGTGCAACGACTCTGTTTGGATTCCCAGAATTAGTTGCCAAATACAAAAAATCTCCGGAGAAAATTTTCATTACACTAGACCTATACGAAGCCATAGCCGACCTCTGTCCGGAGATAAATTGCATTTTCTCATCCACAGCATCATCCAACGTACAATCACAAGCCGTCAGTACACTAGTCAAACTCGGAGAAAACATTGGCACATTAATCACTGACTTCGAATCGTCTATTCAGAAAGAATCATCGAAGAAACCGGTTCCTAGAGGCGGAGTTCATCCGCTCACTAGCTACGTGATGAACTATATTTCGTTCCTCTCCGATTACAGGGGAGTACTCAACGACATTTTAGCCGATTGGCCTTTACCAACAAAATTACCAATGCCAGAATCATACTACGGAACATTTAAGGAAGAAGATAGTCCGATTACCTTACGTTTCGCTTGGCTGATTCTTGTCCTCCTATGTAAACTCGACGGCAAAGCCGAGCATTACAACAACGTCGCTCTCTCCTACTTGTTCTTGGCCAACAATCTCCAATACATCGTCAACAAAGTTCGCACCTCAAATCTGCGATTCGTCCTCGGCGGCGACTGGATTGAGAAGCACGAATCGAAGATCAAACTGTACTCCTCCAAGTACAGGCGCATTGGATGGAGTGAAGTGATCTCGACGCTGCCGGCGGACGTAAAAGCGGAAATCTCACCGGAGGAAGCAAGTGAATCATTCAGAAATTTCGACAGAGCTTTTAAAGAAACTTGCAGAAAACAGACCTCCTGGATAGTGCCCGATCAAAAGCTCCGTGATGAAATAAGAATCTCGGTGGCAAAGGAACTTGGAGCTTTATACGGCAAGTTTTACGCGGAGAACCGGGTTCGTACTGAGCGGGTTTCTGAGTCGGATCCGCTCGTGAGTGCTCATGATTTGATGAGCACTGCCATGGAGAGGCTTCAGAAGGAGTTTTTCCAGATTTTGTCGGTTAATCGTGAGTATTTGTATTCGGAATCGGTTTCTAGCGTCCAATCGCCGATGACGATATCGGTCAGATCGAGTGTTTCTGATTTTGAACTGGAGACAGAAGATGAGTTCGGCATTGCTAACGAATCTATTTCTGAGGTTGAGCGAGTTTCTATGTCGGCCATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCCACCGGCTATGGAAAAGAATGCGTCAAGGTTTATAAAACTGTGAGGAAATCGATAATTGACGAGAGTCTCTACAACCTTGGTATTCAGAAATTGAGTTTTTCGAAAGTTCAGAAGATGCATTGGGAAGTTCTAGAGAGCAAAATAAAAACCTGGTTGAAAGGCGTGAAAACCGCAGTGAAATCTCTGTTCGAACAAGAGAGAATCCTTTGCGATCATGTTTTCTCGGCTTCCCTTCCCATCAGAGAATCATGCTTCGCTCAAATTTCTAAAGACGGTGCAACGATTCTGTTTGGATTCCCAGAATTAGTTGCCAAATACAAAAAATCTCCGGAGAAAATTTTCATTACACTAGACCTATACGAAGCCATAGCCGACCTCTGGACGGAGATCAAATACATTTTCTCATCCACAGCATCATCCAATGTGCAATCACAAGTCGTCAGTTCACAAATCAAACTCGGAGAAAACATTCGCACATTAATCACTGACTTCGAAATGTCTATTCAGAAAGAATCATCGAAAAAACCTGTTCCTAGAGGCGGAGTTCATCCACTCACTAGCTACGTGATGAACTATATTTTGTTCCTCTCCGATTATAGTAGAATACTCAACGACATTTTAGCCGATTGGCCTTTACCAGAAAAACTATCAATGCCAGAATCATACTACGGAACGCCTAAGGAAGAAGATAGTCCGATTACCTTACGTTTCGCTTGGTTGATTCTTGTCCTCCTATGCAAACTCGACGGCAAAGGCGAGCAATACAACGACGTCGCTCTCTCCTACTTGTTCTTGGCCAACAATCTCCAGTACATCGTCAACAAAGTTCGCACCTCAAATCTGAGATTCCTCCTCGGCGGCGACTGGATTGAGAGGCACGAATCGAGGATCAAATTGTACGCCTCCAAGTACGGTCGCATTGGATGGAATGGAGTATTCTCGTCGCTGCCGGCGGACGTAAAGGCAGAAATCTCACCGGAGGAAGCAAGAGAATCATTCAGAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAGACCTCCTGGGTCGTGCCCGATCAGAAGCTCCGTGATGAAATAAAAATCTCGTTGTCAAAGGAACTTGGAGCTTTATACGGCGAGTTTTACGCGAGGAACCGGGTTCGTACTAGGCGGGTTTCTGAGTCGGATCCGGTAGTCCCACTATCCCCTGATGATTTGAGTAATTACTTTTCGGATCTGTTTTACAGGTCTTGA 2937 44.02 MSTAMERLQKEFSQILSVNREYLYPESVSRESSMTISARSSVSDFELKTEDEFGIAKESISEVERVSMSAMADLKAIADCMISTGYGKECVKIYKTVRKSVIGESLYNLGIEKLSFSKVQKMDWDVLEIKIKSWFKGVKTALKSLFKGEKILCDHVFSASLPIRESCFAQICKAGATTLFGFPELVAKYKKSPEKIFITLDLYEAIADLCPEINCIFSSTASSNVQSQAVSTLVKLGENIGTLITDFESSIQKESSKKPVPRGGVHPLTSYVMNYISFLSDYRGVLNDILADWPLPTKLPMPESYYGTFKEEDSPITLRFAWLILVLLCKLDGKAEHYNNVALSYLFLANNLQYIVNKVRTSNLRFVLGGDWIEKHESKIKLYSSKYRRIGWSEVISTLPADVKAEISPEEASESFRNFDRAFKETCRKQTSWIVPDQKLRDEIRISVAKELGALYGKFYAENRVRTERVSESDPLVSAHDLMSTAMERLQKEFFQILSVNREYLYSESVSSVQSPMTISVRSSVSDFELETEDEFGIANESISEVERVSMSAMADLKAIADCMISTGYGKECVKVYKTVRKSIIDESLYNLGIQKLSFSKVQKMHWEVLESKIKTWLKGVKTAVKSLFEQERILCDHVFSASLPIRESCFAQISKDGATILFGFPELVAKYKKSPEKIFITLDLYEAIADLWTEIKYIFSSTASSNVQSQVVSSQIKLGENIRTLITDFEMSIQKESSKKPVPRGGVHPLTSYVMNYILFLSDYSRILNDILADWPLPEKLSMPESYYGTPKEEDSPITLRFAWLILVLLCKLDGKGEQYNDVALSYLFLANNLQYIVNKVRTSNLRFLLGGDWIERHESRIKLYASKYGRIGWNGVFSSLPADVKAEISPEEARESFRNFNRAFEETYRKQTSWVVPDQKLRDEIKISLSKELGALYGEFYARNRVRTRRVSESDPVVPLSPDDLSNYFSDLFYRS 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2180937 2187757 + CmoCh20G004720.1 Cmo20g00472 404789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00472 978 Gene3D Exocyst complex component Exo70 471 976 - -
Cmo20g00472 978 SUPERFAMILY Cullin repeat-like 1 464 IPR016159 -
Cmo20g00472 978 Gene3D Exocyst complex component Exo70 1 470 - -
Cmo20g00472 978 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 464 IPR004140 GO:0000145|GO:0006887
Cmo20g00472 978 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 1 464 - -
Cmo20g00472 978 Pfam Exo70 exocyst complex subunit 132 464 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmo20g00472 978 Pfam Exo70 exocyst complex subunit 616 972 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmo20g00472 978 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 468 977 - -
Cmo20g00472 978 PANTHER EXOCYST COMPLEX PROTEIN EXO70 468 977 IPR004140 GO:0000145|GO:0006887
Cmo20g00472 978 SUPERFAMILY Cullin repeat-like 466 975 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00472 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212978 846.269
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00840 Cmo20g00472 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00162 Cmo-Chr13:1042791 Cmo20g00472 Cmo-Chr20:2180937 0 dispersed
Cmo20g00472 Cmo-Chr20:2180937 Cmo14g01223 Cmo-Chr14:10395134 5.39E-89 dispersed
Cmo14g00163 Cmo-Chr14:726507 Cmo20g00472 Cmo-Chr20:2180937 1.48E-173 wgd
Cmo02g00840 Cmo-Chr2:5099790 Cmo20g00472 Cmo-Chr20:2180937 0 wgd
Cmo20g00472 Cmo-Chr20:2180937 Cmo04g01289 Cmo-Chr4:6535475 3.23E-142 wgd
Cmo20g00472 Cmo-Chr20:2180937 Cmo07g01009 Cmo-Chr7:4983705 2.65E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g377 . . Bda02g00802 Bda09g01492 Bpe01g00153 . Bma14g00483 . . . . . . . Sed13g1351 Cpe05g00891 . Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 Cla02g01331 Cam02g1412 Cec02g1430 Cco02g1463 Clacu02g1391 Cmu02g1351 Cre02g1670 Cone1ag0674 Cone5ag1180 Cone18ag0321 Cone11ag1266 . Csa06g01715 . Cme11g01259 Blo13g01090 Blo14g00136 Bda07g00609 . Bpe08g00122 Bpe11g00785 Bma07g00116 Bma11g00137 Sed01g0928 Cmo02g00840 Cmo20g00472 Cma02g00839 Cma20g00434 . . . . Bhi10g00657 Tan05g0340 Cmetu11g2447 . Hepe08g0821 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00956 . 10 653 EXO70 exocyst subunit family AT5G03540 76.6 1.2e-285 979.5
Cmo04g01515 . 10 651 EXO70 exocyst subunit family AT5G03540 74.9 2.0e-277 952.2
Cmo03g01110 CST 1 636 EXO70 exocyst subunit family AT5G03540 68.5 4.1e-254 874.8
Cmo07g00855 CST 95 737 EXO70 exocyst subunit family AT5G03540 58.1 5.6e-195 678.3
Cmo03g01110 CST 1 636 EXO70 exocyst subunit family AT5G52340 76.3 2.3e-283 971.8
Cmo18g00956 . 12 653 EXO70 exocyst subunit family AT5G52340 73.7 1.3e-270 929.5
Cmo04g01515 . 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.9e-269 925.6
Cmo07g00855 CST 94 737 EXO70 exocyst subunit family AT5G52340 61.0 1.6e-212 736.5
Cmo03g01110 CST 145 629 EXO70 exocyst subunit family AT5G52350 61.9 7.9e-169 591.3
Cmo04g01515 . 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.8e-166 582.0
Cmo18g00956 . 147 653 EXO70 exocyst subunit family AT5G52350 59.1 4.8e-166 582.0
Cmo13g00020 . 1 626 EXO70 exocyst subunit family AT5G58430 65.3 1.8e-240 829.3
Cmo01g00735 . 1 624 EXO70 exocyst subunit family AT5G58430 65.4 5.4e-240 827.8
Cmo13g00020 . 1 625 EXO70 exocyst subunit family AT1G07000 51.9 6.4e-174 608.2
Cmo01g00735 . 1 623 EXO70 exocyst subunit family AT1G07000 51.3 2.7e-172 602.8
Cmo06g01668 . 58 671 EXO70 exocyst subunit family AT5G13150 51.7 5.7e-168 588.6
Cmo14g01484 . 61 675 EXO70 exocyst subunit family AT5G13150 50.3 8.3e-167 584.7
Cmo04g02383 . 77 673 EXO70 exocyst subunit family AT5G13990 54.3 1.4e-185 647.1
Cmo15g00783 . 92 698 EXO70 exocyst subunit family AT5G13990 53.1 1.0e-183 641.0
Cmo14g01223 CCT,ECH 12 611 EXO70 exocyst subunit family AT1G72470 64.1 1.9e-213 739.6
Cmo01g00011 . 12 596 EXO70 exocyst subunit family AT1G72470 61.7 3.9e-198 688.7
Cmo14g01223 CCT,ECH 12 609 EXO70 exocyst subunit family AT1G54090 62.1 3.2e-208 722.2
Cmo01g00011 . 9 595 EXO70 exocyst subunit family AT1G54090 59.2 4.9e-193 671.8
Cmo14g01223 CCT,ECH 9 610 EXO70 exocyst subunit family AT3G14090 63.4 2.9e-217 752.3
Cmo01g00011 . 9 595 EXO70 exocyst subunit family AT3G14090 60.5 1.1e-200 697.2
Cmo11g00037 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 63.0 3.3e-227 785.4
Cmo10g00061 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 62.2 2.8e-226 782.3
Cmo13g00835 CCT 19 657 EXO70 exocyst subunit family AT5G50380 62.1 6.3e-226 781.2
Cmo05g00650 . 15 684 EXO70 exocyst subunit family AT4G31540 73.3 1.5e-291 999.2
Cmo12g00250 CST 15 682 EXO70 exocyst subunit family AT4G31540 73.1 1.9e-291 998.8
Cmo04g01289 . 40 587 EXO70 exocyst subunit family AT3G55150 51.1 2.2e-148 523.5
Cmo20g00472 CST 471 976 EXO70 exocyst subunit family AT3G55150 50.2 6.7e-129 458.8
Cmo04g00251 . 27 602 EXO70 exocyst subunit family AT2G39380 50.3 1.4e-150 530.8
Cmo04g01289 . 42 587 EXO70 exocyst subunit family AT2G39380 52.2 2.6e-149 526.6
Cmo14g00163 . 26 630 EXO70 exocyst subunit family AT3G09520 55.5 2.4e-179 626.3
Cmo20g00472 CST 1 460 EXO70 exocyst subunit family AT3G09520 50.5 2.8e-127 453.4
Cmo20g00472 CST 473 978 EXO70 exocyst subunit family AT5G59730 51.5 9.2e-139 491.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023322 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00472 Cmo_Chr20 FPKM 3.314034 3.168267 2.664298 2.778327 9.468742 8.584641 10.699225 2.54951 2.326262 3.601004