Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00478 ATGGATTGTAGAAGAAGATTTGGATTACTGTTCTGGATTTTGTTCATTTCGTTGCTGCCGTGCATTTCTTGTTTGTTTAATCCGGTAGATAATTATCTTATTGACTGTGGATCGCCGGCTAATGTATCTGTGGGTAATCGTGTTTTCATGGCCGATAATTTGGTCTCCAAGTTGCTTTCCACCCCAAAAGTCATTCTGGCTAATACGTCTTCAGTACCTGCCAGTTCTTCTAATGATTCGTCGCTGTTTGGAACGGCTAGAATCTTCACTGGATCATCAAAATTCAAGTTTCCAATTACGGCTGGAAGGCACTGGATCCGTCTCTATTTCTATCCATTTGTGTTTCCTGGCTTCAATATGAGTGCTGCAAATTTTAGTGTTTCGACCCAAAATTTTGTTCTGCTGCGAGATTTAGTTGCTGTGAAGAATCCTGTGGTCAAAGAGTTCTCTGTTAACGTAGCTTCAGATACTCTTGAAGTTATATTTACTCCTGTTAATGGCTCCTTTGCATATGTGAATGCCATTGAAGTTACTTCTGTTCCTGACATTCTCATCACTGATGAAGCCAGTTTGTTAGAACCGTCTGGTAAATTCGACGGGCTATCTGCTCTGGCATATGAGACAGTTGCTAGGGTTAATATGGGTGGGCCAAAGGTTTCTCCAGATAATGATCCTCTCGCGCGGAGTTGGGTTCCTGATGAGAGCTTTCTAGTTAATAAGAATTCTGCAATAAGTTTCTCTAACATTGCAGCTGTTAAATACAGTGATGATGGGGCAGCTCCAGAGATTGCTCCAAATGTTGTCTACGGTACCCTAACCGAGATGAACTCGAAGGATGATCCAAGCAGTAATTTCAATGTGACATGGCGATTTAAAGTGGACCCGGAGTTTCAGTACCTTGTTCGGTTTCACTTCTGTGACATTGTGAGCAAAGCTCTACACCAACTTTATTTCAATGTTTACGTTGACTCATGGTTGGTCGCTCGGGATTTAGATCTTAGTATTCCTCTTAACAATGCTCTGGGCACTCCTTACTATATGGACGCTGTTACAGGATTGATCAAGAATGACATACTTCTTGTGAGCATTGGCCCAGCAAATTTAGCCAATGTGTATCCAAATGCCATTCTAAATGGTCTGGAAATCATGAAAATGAACAACTCAGTTGGCAGTCTTAGTGGGGAAGACTCTGTAATTAGTTTTCTGAACTCGACTTCTTCCAATAAGCACATCGGCGTGATTGTGGGCGTAACCGTTGGTGCATTTGTTGCAGCTATGTTGGTCGCTGTTCTGTTTATACTGAACAGACGAAGAAGAAAGGGAATGCATCAAGCTCCATCAAAAACATGGATTTCGATATCGACGGCTGGAGGAATGTCACACACTATGGGAAGTAAATACTCAAATGGCACTATCACAAGTGCTGCTTCCAACTATGGATATCGTATACCGTTCGCAACAGTTCAAGAGGCTACAAATAACTTCGATGAGAGCTGGGTTATTGGTATTGGAGGGTTTGGGAAAGTATACAAAGGAGTTTTGAATGATGGCACCAAAGTTGCTGTGAAGAGGGGTAACCCACGTTCCCAACAAGGACTGGCAGAGTTTCAAACTGAAATCGAGATGCTATCACAGTTCCGTCATCGTCATCTTGTATCGTTGATTGGGTACTGCGATGAGAGGAATGAGATGATACTGATTTATGAATATATGGAGCAGGGGACCCTGAAGAGCCATCTATATGGTTCTGATTTCCCTAGTTTGAGCTGGAAGGAGAGATTAGAGGTCTGCATTGGAGCCGCTAGAGGACTTCATTACCTCCACACTGGTTATGCTAAACCAGTTATTCATCGTGATGTCAAGTCTGCTAATATTTTACTCGATGAAACGCTCATGGCAAAGGTCGCTGACTTCGGTCTTTCAAAGACAGGGCCTGAAATTGACCAAACCCATGTTAGTACGGCCGTGAAAGGAAGTTTCGGATACCTCGATCCCGAATATTTCAGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGAGTTGTGCTGTTTGAAGTCCTTTGTGCAAGACCTGTCATAGATCCAACCCTTCCAAGAGAAATGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAAAGGGCAGTTGGACCAAATCATTGATCCTACTCTAGTGGGAAAAATTAGACCAACTTCTCTTAGGAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCTGACTATGGAGTCGACAGGCCATCTATGGGAGACGTATTATGGAACTTGGAGTATGCACTTCAGCTACAAGAAGCAGTCGTTGAAGTCGATCCTGAAGATAACAGTACAAATATGATCGGTGAGCTCTCTCCACAGATTAACAATTTCAACGACGTTGAGGCAGGTGTTTCCGCTACACGGTTTGACATTCCGGGTGTGGATGATCTCTCGGGAGTCTCCATGAGTAGGGTGTTCTCTCAGCTGGTGAAGTCTGAAGGCGACGATGTAGGCAGGCGAGTCTTTGCAATATCCATCAAACATGTTACTTCTTTAACGAACAAGGTAGTTCGATTGCGATTTGCATCACTTCATCTTGAGCATCCTGGCAATGTCAATGACCTTGGTGTGTCATTCTTTTCTGAATTTCCCTATCTCCGTTTGGGAGCGGTGGGAGCGGTGTCGAGGCGCTTTGTCGTAGTTACAGAGCTCTACAAAGTTTCAGTCTCCTTTCTGCTTCAACACTGTGCTTCTTCAATACAAAGCTCTTTCATCATCGCCATGCGTTTCTTCGACCTCAACATACCTTACGATGAGCATTCATCATCATCATCATCATCATCATCATCATCATCATCTTCGTCTTCTTCTTCAAGTAGGAATCGCATCAGGATTGTGGCCAAACTCATGGAGCTCGGCTACTCTGGTATCGCCTACAACCGTACAATCAAAGGAGTGATGTCCGATCGAGACCGTTGTTCTATTCCCCTCCTCAACGTTTCATCTCTTCACAGTATCCTTCCATCGTTCTCCGCCTCCGTAGAGTTCCACCGGGATCTCCTCGGCGTCCCACGGTCCTCTCGTTTCCGGCAGTACACGCGTCTTACTATTTCTGTTAACAGTTTGCACGAGGTTATGGCTGTCAATTCTGACAACCTTATTCTGAAGACCTACGATTTGATTGCTGTGAAGCCTCTTAATCAGTATTCTTTCGAGCAGGCTTGCGAGAAATTGGAGATAGATATAATTGCCATTGATTTTGCGGAGAAACTGCCTTTCAGTTTGAAGCAAGGTCCGATTAAATCTGCAATTCAGCGTGGAGTTTACTTCGAAATCATGTACTCTGATCTCCTTTCCGATGTTCATGATAGGAGGCAAACGATATCCGCTGCTAAGATCTTGGTGGATTGGACTAAAGGAAAGAATCTCATATTATCCAGTGCTGCCCCCTCTGTAAATGAAATCAGAGGACCTTACGATGTCGCAAACTTGTCATCATTGCTGGGTGTCTCTATGGAATGCGCAAAAGCTGCTGTTTCAAAGAACAGTAGGAGTCTTATAGCTAATGCTCTAAAGAGAAAACAATTCTACAAGGAAACCATTCCAGTTGAAAGGATATCAGCAGATGATAAATTAGATCTGAATGACCCTTTGTCAGCGGATTTGTTCAAATGGGATCCTATATCAGGTGGTGAAGGTGATTTTTTATTGGATGATATAGCAAAATCTTTTGCTGCCTCTAATGAAAAATTGAGAGGTGCGAAAGCCATTGACGACATGCCACCACAAGGTTTTCTAGTCAAGAATGTAATATCAGGCTCTAAGGAAAAACTGTTGTTGAATGAGAAAGGCAAAAGCACTGTTGAAGAAATTGCGCAGCCAAAGACCTCAAAGATGGAAGAACCTATTGAAATGGACATTGATAACGTGCAATTGAAAAACCCACTACCCAGTAGCGAGTTAAGTGCAGTATCAGCAAATGAGCTTCTGAATTCTCCTACATCTACCAGAGATGTATCAGCTGTAGTTTTCGGAAATGACAGAAAAGAAACTTCTAAAATGGAGGCTGTTGATTTTCATCAGTATGAATATGGTCTAAAAAGTTCTGATATATTGACTGGTTCAGAAAATATGTTGAGGGACAAAACTTCTACTAATTTGGTTTCAGAAAATCAAAAGAATGTGATAATGGACGGTACATTTACAGCTGAAGAATGTTTACTTGATGCAAGACTTGGGAAGCCTGGGGATGTGGCAATGGCTGATTGTCATGTTTCTCCTCTTGGTTTGAAAGATGATCATTTGATCTCGATTAGACAACAAACATCTGAGGTGTTAATGGAAGAGCAGAAAAGTGGAGAAGCTGATCCAGAGATCACACAACCACCTTCCGATCAGTAG 4404 42.64 MDCRRRFGLLFWILFISLLPCISCLFNPVDNYLIDCGSPANVSVGNRVFMADNLVSKLLSTPKVILANTSSVPASSSNDSSLFGTARIFTGSSKFKFPITAGRHWIRLYFYPFVFPGFNMSAANFSVSTQNFVLLRDLVAVKNPVVKEFSVNVASDTLEVIFTPVNGSFAYVNAIEVTSVPDILITDEASLLEPSGKFDGLSALAYETVARVNMGGPKVSPDNDPLARSWVPDESFLVNKNSAISFSNIAAVKYSDDGAAPEIAPNVVYGTLTEMNSKDDPSSNFNVTWRFKVDPEFQYLVRFHFCDIVSKALHQLYFNVYVDSWLVARDLDLSIPLNNALGTPYYMDAVTGLIKNDILLVSIGPANLANVYPNAILNGLEIMKMNNSVGSLSGEDSVISFLNSTSSNKHIGVIVGVTVGAFVAAMLVAVLFILNRRRRKGMHQAPSKTWISISTAGGMSHTMGSKYSNGTITSAASNYGYRIPFATVQEATNNFDESWVIGIGGFGKVYKGVLNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEQGTLKSHLYGSDFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDETLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDPTLVGKIRPTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVEVDPEDNSTNMIGELSPQINNFNDVEAGVSATRFDIPGVDDLSGVSMSRVFSQLVKSEGDDVGRRVFAISIKHVTSLTNKVVRLRFASLHLEHPGNVNDLGVSFFSEFPYLRLGAVGAVSRRFVVVTELYKVSVSFLLQHCASSIQSSFIIAMRFFDLNIPYDEHSSSSSSSSSSSSSSSSSSSRNRIRIVAKLMELGYSGIAYNRTIKGVMSDRDRCSIPLLNVSSLHSILPSFSASVEFHRDLLGVPRSSRFRQYTRLTISVNSLHEVMAVNSDNLILKTYDLIAVKPLNQYSFEQACEKLEIDIIAIDFAEKLPFSLKQGPIKSAIQRGVYFEIMYSDLLSDVHDRRQTISAAKILVDWTKGKNLILSSAAPSVNEIRGPYDVANLSSLLGVSMECAKAAVSKNSRSLIANALKRKQFYKETIPVERISADDKLDLNDPLSADLFKWDPISGGEGDFLLDDIAKSFAASNEKLRGAKAIDDMPPQGFLVKNVISGSKEKLLLNEKGKSTVEEIAQPKTSKMEEPIEMDIDNVQLKNPLPSSELSAVSANELLNSPTSTRDVSAVVFGNDRKETSKMEAVDFHQYEYGLKSSDILTGSENMLRDKTSTNLVSENQKNVIMDGTFTAEECLLDARLGKPGDVAMADCHVSPLGLKDDHLISIRQQTSEVLMEEQKSGEADPEITQPPSDQ 1467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2222862 2229494 + CmoCh20G004780.1 Cmo20g00478 404795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00478 1467 Gene3D Transferase(Phosphotransferase) domain 1 571 788 - -
Cmo20g00478 1467 ProSiteProfiles Protein kinase domain profile. 495 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00478 1467 CDD STKc_IRAK 501 766 - -
Cmo20g00478 1467 Gene3D - 31 180 - -
Cmo20g00478 1467 Gene3D - 204 387 - -
Cmo20g00478 1467 MobiDBLite consensus disorder prediction 1445 1467 - -
Cmo20g00478 1467 Gene3D Phosphorylase Kinase; domain 1 458 570 - -
Cmo20g00478 1467 PANTHER OS07G0166700 PROTEIN 19 827 IPR045272 GO:0004714|GO:0006468
Cmo20g00478 1467 Pfam RNase P subunit p30 932 1183 IPR002738 GO:0008033
Cmo20g00478 1467 Pfam Protein tyrosine and serine/threonine kinase 500 692 IPR001245 GO:0004672|GO:0006468
Cmo20g00478 1467 Gene3D - 1026 1190 - -
Cmo20g00478 1467 SUPERFAMILY PHP domain-like 966 1188 IPR016195 -
Cmo20g00478 1467 SUPERFAMILY Protein kinase-like (PK-like) 472 766 IPR011009 -
Cmo20g00478 1467 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 827 - -
Cmo20g00478 1467 SMART serkin_6 495 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00478 1467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Cmo20g00478 1467 Pfam Malectin-like domain 34 385 IPR024788 -
Cmo20g00478 1467 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00846 Cmo20g00478 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01242 Cmo-Chr1:9971509 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo08g00863 Cmo-Chr8:5573165 Cmo20g00478 Cmo-Chr20:2222862 1.40E-71 dispersed
Cmo09g00879 Cmo-Chr9:4556558 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo16g00112 Cmo-Chr16:509021 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo17g00792 Cmo-Chr17:7601963 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo18g01293 Cmo-Chr18:12459276 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo02g00848 Cmo-Chr2:5155483 Cmo20g00478 Cmo-Chr20:2222862 2.44E-67 transposed
Cmo02g00846 Cmo-Chr2:5146479 Cmo20g00478 Cmo-Chr20:2222862 0 wgd
Cmo20g00478 Cmo-Chr20:2222862 Cmo04g01294 Cmo-Chr4:6573721 0 wgd
Cmo20g00478 Cmo-Chr20:2222862 Cmo04g00256 Cmo-Chr4:1274910 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75154 PF12819 Malectin_like 2.10E-31 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00478 - - csv:101218488 1486.09