Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00487 ATGGAACCGTTGGATAAACCATCGTCAAACTCCTCGCCTCTCGAGCCATTTCCTCGGGACGCGCGAGGATCGCTAGAGGTTTTCAATCCCTCGGCCGCGTATTCATCCCATTCGATCAACTCCATTTCTCGAGCGAACCCAACGTGGTCCAATTGGGCGGAGGCGGACTCGGCCAAACTCGCCGCTAAACCGGCGAGTAAAACCGGCGACGAGATAACGTCATGGATGGCCTTCAAGGACTCGAACGCTCCACCGCAACCTTCATCGCCGGTCGTCCAGAAAACCATCTCGGCGATTCTCAGCGACAAACCGCCGTTAGAAAAGCCGCAATCGGCGGACGAAGTCGGCTCCGCTGCTTTACGCGCTGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAGACAGGAAAGCCTCAGGGAGTCGGAGTTCGAACTTCCGGCGGCGATGAACCGAATATTAAACAAGAGAATTCCAGAAGAGCTTCCAATAACTCGGTGCGAAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGGGGGTTTCCTCGAGTCTCCGAGGATTTGAAAGACGCTCTGTCGACTTTTCAACAAACATTCGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGCGCCGGATTCTTCAAAATGACCGGCTACACCTCCAAGGAGGTCATCGGAAGAAACTGTCGATTTTTACAGGGTGCAGACACAGACCCTGAAGATGTGGCCAAGATCCGGGAGGGTTTACAAGCTGGGACGAGTTACTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACCCCTTTTTGGAATCTTCTTACAATTTCACCCATCAAAGATGATGACGGCAAGGTTCTCAAATTTATTGGAATGCAAGTGGAGGTGAGCAAACACACAGAGGGGTTCAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGACGCACGTCAGAAGGAGATGGCTACCAGCTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCACGGTCTCTAAGTGAGTCTAGGCCTCGGGCTCTAAGTGAATCTATGAACCGTCGGCTATTTAGAAAATCCGGCGCCGGCGGGGATAATGACGGCGACAGATTTGAAACTGGTATGGTTAGGCGAAAGTCAGAGAGCGCTGCAGCTTCAACTGGACGAGGAAGTCGAAGGTCGATGCAGCGTATCAATGAGGTTCCCGACAAGAAACCCAAGAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGATATCATCGACGTTGAAGATGGTTCCGACGACGATAACGACACCGATGACGACGATAGACCAGATAGTGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACCACCCTCGAACGTATAGAGAAAAACTTCGTCATTACCGATCCTAGATTGCCCGACAATCCCATTATCTTTGCTTCTGATAGCTTCCTGGAGCTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGATTTCTGCAAGGTCCCGAAACCGATCGAGCGACCGTCAAGAAAATAAGAGATGCAATCGACAACCAAACCGAAGTTACCGTGCAGCTTATTAACTACACAAAAAGTGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTTCAGTATTTCATTGGAGTTCAACTCGATGGTAGTCAGCATGTCGAACCGCTAAGCAATTCCATACCGGAAACTACTGCGAAGCACGGCGAAAAATTGATAAAAGAAACTGCAGAAAATGTCGATTTGGCAGCTCGAGAACTTCCCGACGCCAATTTGACACCAGATGATTTATGGGCAAATCATTCTAAGATGGTTCAACCTAAACCTCACAGAAAGGATAGTCCTTCCTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATCGAACTGAAACATTTCAAGCCAGTCAAACCTTTGGGATCCGGCGATACTGGCAGCGTGCATTTGGTAGAACTGTGTGGAACTGATCAATTTTTTGCAATGAAGGCAATGGATAAGGGTGTTATGCTCAACCGTAACAAGGTGCATCGAGCTTGCGCCGAGAGGGAAATACTCGACATGTTGGATCATCCTTTTCTTCCTGCATTATACGCGTCGTTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGTCCTGGTGGAGAACTGTTTCTGCTTTTGGACAGACAGCCCACAAAGGTCTTGAAGGAAGATGCTGTGAGGTTTTATGCTGCTGAAGTTATCGTCGCATTGGAGTACCTTCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCCGAGAATGTTCTACTACAAGGCAATGGACACGTTGCCTTGACGGATTTCGACTTGTCATGTTTGACGTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAACAATCAAGAGCTCAACAGGCTCCCGTCTTTATGGCCGAACCTATGCGAGCATCGAACTCCTTTGTCGGAACCGAAGAGTACATAGCACCGGAAATTATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTCTATATGAGATGCTCTATGGCTACACACCCTTTAGAGGGAAGACAAGGCAAAAGACTTTCGCTAACATTCTTCATAAGGATCTTAAGTTTCCAAGAAGTATATCGGCTAGTCTCAGTGTGAAGCAGTTAATCTGTAGGTTACTGCATAGAGACGCCAAAAACCGATTGGGTTCTCGAGAAGGAGCGAATGAAATCAAACGACATCCTTTCTTCCGAGGCGTTAATTGGGCGCTCGTTCGATGCATGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGACCGTCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGATTTGGATGTAAAAGCTCTTGACCTCAAATGTTGTAATGTAATGGTGGTTGGTGAAATAATCTCCTCTGCCTCCTTTTTTAATAATTTTGTTGGTCTGAGTTATTTGTCATTGTCATTTGTTGACTTTTATGCCCTGTAA 3120 47.05 MEPLDKPSSNSSPLEPFPRDARGSLEVFNPSAAYSSHSINSISRANPTWSNWAEADSAKLAAKPASKTGDEITSWMAFKDSNAPPQPSSPVVQKTISAILSDKPPLEKPQSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNIKQENSRRASNNSVRSSGDMSEEGGRERGFPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREGLQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSLSESRPRALSESMNRRLFRKSGAGGDNDGDRFETGMVRRKSESAAASTGRGSRRSMQRINEVPDKKPKKSSRRSFMGIMRKSQSNVDIIDVEDGSDDDNDTDDDDRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNSIPETTAKHGEKLIKETAENVDLAARELPDANLTPDDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIELKHFKPVKPLGSGDTGSVHLVELCGTDQFFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENVLLQGNGHVALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPVFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLSVKQLICRLLHRDAKNRLGSREGANEIKRHPFFRGVNWALVRCMHPPELEASLFQTVEPEKDANNKAPDLDVKALDLKCCNVMVVGEIISSASFFNNFVGLSYLSLSFVDFYAL 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2272338 2281804 - CmoCh20G004870.1 Cmo20g00487 404804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 157 171 - -
Cmo20g00487 1039 ProSiteProfiles PAC domain profile. 259 313 IPR000700 -
Cmo20g00487 1039 SUPERFAMILY Protein kinase-like (PK-like) 649 974 IPR011009 -
Cmo20g00487 1039 Pfam PAS domain 206 302 IPR000014 -
Cmo20g00487 1039 Pfam PAS domain 493 585 IPR000014 -
Cmo20g00487 1039 Gene3D PAS domain 199 360 - -
Cmo20g00487 1039 ProSitePatterns Protein kinases ATP-binding region signature. 677 700 IPR017441 GO:0005524
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 130 183 - -
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 349 363 - -
Cmo20g00487 1039 ProSiteProfiles Protein kinase domain profile. 671 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00487 1039 PANTHER PHOTOTROPIN-1 134 992 - -
Cmo20g00487 1039 SUPERFAMILY PYP-like sensor domain (PAS domain) 486 585 IPR035965 -
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 1 15 - -
Cmo20g00487 1039 Gene3D Phosphorylase Kinase; domain 1 670 754 - -
Cmo20g00487 1039 SMART pas_2 472 541 IPR000014 -
Cmo20g00487 1039 SMART pas_2 187 256 IPR000014 -
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 439 456 - -
Cmo20g00487 1039 PANTHER FLIPPASE KINASE 1-RELATED 134 992 - -
Cmo20g00487 1039 SMART pac_2 262 304 IPR001610 -
Cmo20g00487 1039 SMART pac_2 547 589 IPR001610 -
Cmo20g00487 1039 SMART serkin_6 671 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00487 1039 TIGRFAM sensory_box: PAS domain S-box protein 495 585 IPR000014 -
Cmo20g00487 1039 TIGRFAM sensory_box: PAS domain S-box protein 212 304 IPR000014 -
Cmo20g00487 1039 ProSiteProfiles PAS repeat profile. 185 256 IPR000014 -
Cmo20g00487 1039 CDD PAS 485 585 IPR000014 -
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 1 23 - -
Cmo20g00487 1039 ProSiteProfiles PAC domain profile. 544 598 IPR000700 -
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 344 466 - -
Cmo20g00487 1039 Gene3D Transferase(Phosphotransferase) domain 1 755 968 - -
Cmo20g00487 1039 Gene3D PAS domain 458 623 - -
Cmo20g00487 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Cmo20g00487 1039 ProSiteProfiles PAS repeat profile. 474 543 IPR000014 -
Cmo20g00487 1039 CDD PAS 212 301 IPR000014 -
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 406 420 - -
Cmo20g00487 1039 MobiDBLite consensus disorder prediction 370 387 - -
Cmo20g00487 1039 SUPERFAMILY PYP-like sensor domain (PAS domain) 206 298 IPR035965 -
Cmo20g00487 1039 CDD STKc_phototropin_like 669 974 - -
Cmo20g00487 1039 Pfam Protein kinase domain 673 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00853 Cmo20g00487 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00487 Cmo-Chr20:2272338 Cmo20g00685 Cmo-Chr20:3370425 0 dispersed
Cmo02g00853 Cmo-Chr2:5187055 Cmo20g00487 Cmo-Chr20:2272338 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75155 PF00069 Pkinase 8.60E-62 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00487 K20715 - csv:101214662 1746.48