Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00489 ATGGGATGCTTTCGCCACAGCAAAAAACAGAGGAAAAAATTCGACAGCAATTCACCCATTTCTTCAGTTAAAGTAGAAGCGGATTTGAAGGTAGAAACACGGGAAGAAGTAAAAGAGCAGACTCCTGAAAATGACCAGCTGGCGTCAAATATAACCAGAGAGGTTTCCAGTAAAGCAAAAAGGAACGAAGAGATAGAAAAATTTACCTACCATGAACTTGTAGAAGCAACGAGAAATTTCAAGTCTGATTGCTTTCTGGGTGAAGGAGGCTTCGGTAAAGTTTACAAGGGCCATTTGATAAGAATCGACCAGGTTGTAGCTATAAAACAACTCGACCGGAATGGGCTTCAAGGGGTAAGAGAATTCGTGGTGGAAGTATTGACGTTAAGTTTGGCCGATCACCCAAATCTTGTAAAATTGTTAGGATATTGCGCAGAACGAGATGAACGACTGTTGGTTTACGAGTTCATGCCATTAGGCTCATTGGACAAACATTTACACGATCTTCCACCGGACAAAAACGTGCTTGATTGGAATACGAGAATGAAGATAGCGGTGGGCGCAGCGAGAGGATTGGAGTATTTGCACAACAAAATGAGGCCAGCAGTTATATATAGGGATCTAAAATGCTCGAACATTTTGCTGGGTGAAGGGTATTGGCCAAAGCTCTCGGATTTCGGGTTAGCCAAAGTGGGTCCAAGTGGAGATAACACTCACGTTTCTACTAGAGTCATGGGAACCTATGGATATTGTGCGCCCGATTACGCAATGACAGGCCAATTGACATTCAAATGCGATATCTATAGCTTTGGAGTTGTTCTCTTGGAGCTCATCACGGGAAGGAAAGTCATCGACTATACAAGACCTCCGAAGGAGCTGAGTTTGGTGACATGGGCAAGACCATTGTTCCGAGATCGAAAGAGGTTCTTGATAATGGCGGACCCGAGGCTCGATGGTCAATTTCCTGTAAGAGGATTGTATCAAGCTCTTGCCATTGCAGCCATGTGTGTGCAGGAGCAACCAACTCAAAGGCCAGTGATTTCAGAAGTGGTCTCGGCTTTAGATTTTCTTGCTTCTCAAAAATTTACTCAAAAGAGGGGTTAG 1104 43.93 MGCFRHSKKQRKKFDSNSPISSVKVEADLKVETREEVKEQTPENDQLASNITREVSSKAKRNEEIEKFTYHELVEATRNFKSDCFLGEGGFGKVYKGHLIRIDQVVAIKQLDRNGLQGVREFVVEVLTLSLADHPNLVKLLGYCAERDERLLVYEFMPLGSLDKHLHDLPPDKNVLDWNTRMKIAVGAARGLEYLHNKMRPAVIYRDLKCSNILLGEGYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKCDIYSFGVVLLELITGRKVIDYTRPPKELSLVTWARPLFRDRKRFLIMADPRLDGQFPVRGLYQALAIAAMCVQEQPTQRPVISEVVSALDFLASQKFTQKRG 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2288463 2290549 - CmoCh20G004890.1 Cmo20g00489 404806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00489 367 PANTHER OS07G0668900 PROTEIN 7 364 - -
Cmo20g00489 367 CDD STKc_IRAK 86 355 - -
Cmo20g00489 367 Gene3D Phosphorylase Kinase; domain 1 41 156 - -
Cmo20g00489 367 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 7 364 - -
Cmo20g00489 367 Pfam Protein kinase domain 85 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00489 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Cmo20g00489 367 SUPERFAMILY Protein kinase-like (PK-like) 65 360 IPR011009 -
Cmo20g00489 367 ProSiteProfiles Protein kinase domain profile. 80 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00489 367 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Cmo20g00489 367 Gene3D Transferase(Phosphotransferase) domain 1 157 366 - -
Cmo20g00489 367 SMART serkin_6 80 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00489 Cmo-Chr20:2288463 Cmo06g01473 Cmo-Chr6:10592585 1.89E-163 dispersed
Cmo13g00174 Cmo-Chr13:1158527 Cmo20g00489 Cmo-Chr20:2288463 0 transposed
Cmo14g00169 Cmo-Chr14:757185 Cmo20g00489 Cmo-Chr20:2288463 2.67E-159 wgd
Cmo20g00489 Cmo-Chr20:2288463 Cmo04g01306 Cmo-Chr4:6640283 3.13E-167 wgd
Cmo20g00489 Cmo-Chr20:2288463 Cmo04g00265 Cmo-Chr4:1331189 1.12E-164 wgd
Cmo20g00489 Cmo-Chr20:2288463 Cmo06g00339 Cmo-Chr6:1641123 2.97E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75156 PF00069 Pkinase 9.60E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00489 - - csv:101221327 585.104