Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00493 ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACGCCGAATGAGGACTCTGTCCTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAATCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCTACACGCGCCGGTGGCGAGCTCTTCATGATCAACTTCGGGATATTGAAGTCTGGAAGCGCGAACGACGTTGTCACGAAGGAGCTTTTTCCAATAGGTGGAACGGTGAATCCTGACTTCGGGATTCTTCAGGGGCATAACTCTGCCTCTTCTTCGTCAAATTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGATCAGCAGGGGAGGGGAGAATGATTCAACCGGTTCAGCCTCAGCCGGCGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTTGACACAGCACATTCAGCGGCGAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCATCCTTAGTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAAAGCACTGGTTTCTCAAGAGGGAGCTCAAAATACAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTCGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCTGCCATCCAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACGTACGGAGAAAGGGTTTCTGAGGGCAGCAGTGAAGGTTGTCGGATCATGCTTGATTTGAATTTAGGGATTTCGCCCCTCTCAATTGACAACCGTCCAAAGGATAATGAGGGGCACCTGCGGTTCCAATCTGGTCCTTGTTATGCTAATGACATGAGCACAATGATAGAGAGCAATGCTGATGCAGCAGTTAGCGATCCATCTTTGAAAGGGCCGGTAATGGCATCAGGGCATGTTCCCTTATGGAATGGTTTACAACAATCTTGCTTACTTCCCAGTGAGGAACGCGTGACAGATAAGAGACATGCATTAGGTTCATCCCAAGGAGTCGTCCCCAACTGGGCATGGCAAATTCATAACCAGGGTAATGCCACCCAACTCCCATTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTATCCCGGCTGCCATTCTTCCACCGTGCCAACCGGGCTCGACCGCCCATAACCTCCATTTCACTTCAGCCAAAGCTTCCCCCAACTCCCCTCAGTTGAACCCACAACAGCCACCACCATAA 1470 50.14 MFDLNLNVDSPDATPNEDSVLFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFMINFGILKSGSANDVVTKELFPIGGTVNPDFGILQGHNSASSSSNSSRKNWINLAFDRSGSAGEGRMIQPVQPQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFILSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIQCNGREAVTNFEPSTYGERVSEGSSEGCRIMLDLNLGISPLSIDNRPKDNEGHLRFQSGPCYANDMSTMIESNADAAVSDPSLKGPVMASGHVPLWNGLQQSCLLPSEERVTDKRHALGSSQGVVPNWAWQIHNQGNATQLPLFSAAASSGFSFSAIPAAILPPCQPGSTAHNLHFTSAKASPNSPQLNPQQPPP 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2325892 2329094 - CmoCh20G004930.1 Cmo20g00493 404810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00493 489 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 CDD AP2 157 212 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 MobiDBLite consensus disorder prediction 27 58 - -
Cmo20g00493 489 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 SUPERFAMILY DNA-binding domain 156 213 IPR016177 GO:0003677
Cmo20g00493 489 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Cmo20g00493 489 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 Pfam AP2 domain 248 296 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 MobiDBLite consensus disorder prediction 130 158 - -
Cmo20g00493 489 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Cmo20g00493 489 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Cmo20g00493 489 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Cmo20g00493 489 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 452 - -
Cmo20g00493 489 MobiDBLite consensus disorder prediction 30 58 - -
Cmo20g00493 489 MobiDBLite consensus disorder prediction 465 489 - -
Cmo20g00493 489 MobiDBLite consensus disorder prediction 465 480 - -
Cmo20g00493 489 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00859 Cmo-Chr2:5223165 Cmo20g00493 Cmo-Chr20:2325892 0 dispersed
Cmo03g00985 Cmo-Chr3:7417465 Cmo20g00493 Cmo-Chr20:2325892 8.22E-102 dispersed
Cmo07g00709 Cmo-Chr7:3197835 Cmo20g00493 Cmo-Chr20:2325892 2.81E-98 dispersed
Cmo14g00175 Cmo-Chr14:787506 Cmo20g00493 Cmo-Chr20:2325892 1.91E-118 wgd
Cmo02g00858 Cmo-Chr2:5220052 Cmo20g00493 Cmo-Chr20:2325892 5.38E-41 wgd
Cmo20g00493 Cmo-Chr20:2325892 Cmo04g01310 Cmo-Chr4:6668332 1.20E-37 wgd
Cmo20g00493 Cmo-Chr20:2325892 Cmo04g00269 Cmo-Chr4:1358706 1.80E-55 wgd
Cmo20g00493 Cmo-Chr20:2325892 Cmo06g00342 Cmo-Chr6:1658640 4.97E-84 wgd
Cmo20g00493 Cmo-Chr20:2325892 Cmo07g00986 Cmo-Chr7:4842641 5.59E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11728 PF00847 AP2 5.00E-09 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00493 K09284 - csv:101222024 810.831