Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00493 | ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACGCCGAATGAGGACTCTGTCCTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAATCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCTACACGCGCCGGTGGCGAGCTCTTCATGATCAACTTCGGGATATTGAAGTCTGGAAGCGCGAACGACGTTGTCACGAAGGAGCTTTTTCCAATAGGTGGAACGGTGAATCCTGACTTCGGGATTCTTCAGGGGCATAACTCTGCCTCTTCTTCGTCAAATTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGATCAGCAGGGGAGGGGAGAATGATTCAACCGGTTCAGCCTCAGCCGGCGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTTGACACAGCACATTCAGCGGCGAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCATCCTTAGTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAAAGCACTGGTTTCTCAAGAGGGAGCTCAAAATACAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTCGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCTGCCATCCAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACGTACGGAGAAAGGGTTTCTGAGGGCAGCAGTGAAGGTTGTCGGATCATGCTTGATTTGAATTTAGGGATTTCGCCCCTCTCAATTGACAACCGTCCAAAGGATAATGAGGGGCACCTGCGGTTCCAATCTGGTCCTTGTTATGCTAATGACATGAGCACAATGATAGAGAGCAATGCTGATGCAGCAGTTAGCGATCCATCTTTGAAAGGGCCGGTAATGGCATCAGGGCATGTTCCCTTATGGAATGGTTTACAACAATCTTGCTTACTTCCCAGTGAGGAACGCGTGACAGATAAGAGACATGCATTAGGTTCATCCCAAGGAGTCGTCCCCAACTGGGCATGGCAAATTCATAACCAGGGTAATGCCACCCAACTCCCATTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTATCCCGGCTGCCATTCTTCCACCGTGCCAACCGGGCTCGACCGCCCATAACCTCCATTTCACTTCAGCCAAAGCTTCCCCCAACTCCCCTCAGTTGAACCCACAACAGCCACCACCATAA | 1470 | 50.14 | MFDLNLNVDSPDATPNEDSVLFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFMINFGILKSGSANDVVTKELFPIGGTVNPDFGILQGHNSASSSSNSSRKNWINLAFDRSGSAGEGRMIQPVQPQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFILSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIQCNGREAVTNFEPSTYGERVSEGSSEGCRIMLDLNLGISPLSIDNRPKDNEGHLRFQSGPCYANDMSTMIESNADAAVSDPSLKGPVMASGHVPLWNGLQQSCLLPSEERVTDKRHALGSSQGVVPNWAWQIHNQGNATQLPLFSAAASSGFSFSAIPAAILPPCQPGSTAHNLHFTSAKASPNSPQLNPQQPPP | 489 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 2325892 | 2329094 | - | CmoCh20G004930.1 | Cmo20g00493 | 404810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00493 | 489 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | PRINTS | Ethylene responsive element binding protein signature | 288 | 308 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | CDD | AP2 | 157 | 212 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | MobiDBLite | consensus disorder prediction | 27 | 58 | - | - | |
Cmo20g00493 | 489 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 306 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | SMART | rav1_2 | 249 | 312 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | SUPERFAMILY | DNA-binding domain | 156 | 213 | IPR016177 | GO:0003677 | |
Cmo20g00493 | 489 | SUPERFAMILY | DNA-binding domain | 248 | 307 | IPR016177 | GO:0003677 | |
Cmo20g00493 | 489 | CDD | AP2 | 248 | 308 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | Pfam | AP2 domain | 248 | 296 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | MobiDBLite | consensus disorder prediction | 130 | 158 | - | - | |
Cmo20g00493 | 489 | Gene3D | AP2/ERF domain | 156 | 214 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | Gene3D | AP2/ERF domain | 248 | 307 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00493 | 489 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 452 | - | - | |
Cmo20g00493 | 489 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
Cmo20g00493 | 489 | MobiDBLite | consensus disorder prediction | 465 | 489 | - | - | |
Cmo20g00493 | 489 | MobiDBLite | consensus disorder prediction | 465 | 480 | - | - | |
Cmo20g00493 | 489 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 452 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo20g00493 | Cmo-Chr20:2325892 | 0 | dispersed | |
Cmo03g00985 | Cmo-Chr3:7417465 | Cmo20g00493 | Cmo-Chr20:2325892 | 8.22E-102 | dispersed | |
Cmo07g00709 | Cmo-Chr7:3197835 | Cmo20g00493 | Cmo-Chr20:2325892 | 2.81E-98 | dispersed | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo20g00493 | Cmo-Chr20:2325892 | 1.91E-118 | wgd | |
Cmo02g00858 | Cmo-Chr2:5220052 | Cmo20g00493 | Cmo-Chr20:2325892 | 5.38E-41 | wgd | |
Cmo20g00493 | Cmo-Chr20:2325892 | Cmo04g01310 | Cmo-Chr4:6668332 | 1.20E-37 | wgd | |
Cmo20g00493 | Cmo-Chr20:2325892 | Cmo04g00269 | Cmo-Chr4:1358706 | 1.80E-55 | wgd | |
Cmo20g00493 | Cmo-Chr20:2325892 | Cmo06g00342 | Cmo-Chr6:1658640 | 4.97E-84 | wgd | |
Cmo20g00493 | Cmo-Chr20:2325892 | Cmo07g00986 | Cmo-Chr7:4842641 | 5.59E-105 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11728 | PF00847 | AP2 | 5.00E-09 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00493 | K09284 | - | csv:101222024 | 810.831 |