Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00495 ATGGACGACTTCTTAGACAATATACCGTCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTTATTATCCCCGTTGAGTCCGCTCATCGAGCCATTTCGTACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTACGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGAATTTAGAGATACGACTAGCTGATCATGAGCATGAGCTGATTGAAATGAACTCAAACAGCGAGAAACTTCAACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATACCGAGGATGGATCATTACTTGAACAGGTTGATAAAACAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTTTCATCACGCCTCACTGAACTTGAAGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGATTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGACACATTGAATATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAATCTCAGATTCAGGAAGCTCTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGGATAATATTTCATGTGATGGATACGTTTGTCCATGACAGCAAGTGCGATGATGTGCCAGTGTTGTATCGATGCAATGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGTTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGACGCTATGTTCTTCTTTTGATGTCACTTTTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTCGGCGCGTCTGCCTACAAGTGTAGAGATATCACATGCAGTGATGTACACACTGTTGGGTTAGTTAAATACCGCGATGCCTATCCATTTGGTGTTGACCCAAGTTGGCGCGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTATCTATCTTGTTGGGTATTGCCCAAATGAACTTGGGGATCATATTGAGTTACTTTAATGCACGCTTTACTGGAAGCTCACTCGATATCAGGTACCAGTTTGTACCACAAGTGATTTTTCTTAACAGCCTCTTCGGGTATCTATCTCTTCTCATTGTCATCAAGTGGTGCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGTGAGAACGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATCTTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTCCCTAAACCCTTTATTTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATGCTTGGAACCTCTGAGATGGATCTTGAAGTGGAACCTGATTCGGCAAGGCAACACCAAGAGGATTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCGTCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTACGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTTGTCATTCGGCTGATTGGATTAGCTGTTTTTTCGTTTGCCACTGCTTTCATACTTCTCATGATGGAGACCCTTAGTGCCTTCCTTCATGCCTTACGTCTCCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGAATGGACTGTGAGTTAGCGGAAATTTGCAGTAGAGAAATCGGTACTCCTCGATCAAGAAACTTCTCTCGCAGATTCAGTGCTTCCGAGATTATTGTAAAGCAACTGAATCTTGAGAAGAAGTTAAATGGTCACGATGGCTGTGTAAACGCTGTAGAGTTTAACTCGACTGGCGATCTTCTCGTGTCCGGTTCCGATGACTGTAAAGTTATACTATGGGATTGGGCAAGAAATTCCGAGAGGTTTTCGTATCCTTCTGGTCACCTCGACAACATATTCCAGACCAAAATTATGCCATTCACTAATGATCAGAAAATAGTTACTTCGGCTGCAGATGGAAAGGTGATTTTCCATAATATGAAAGTTGTTGCAAAAATGTTGGGGGAGCACCAAGGCTCTGTTCATGAGCTTGCTGTGGAGCCTGGAAGCCCACACATACTTTATAGCTGTGGTGAAGATGGTCTTGTGCAGCATTTCGATTTACGCAATTCTTCTGCAATAAAACTTTTCTATTGCACCTCCTTTGCTGAAAGGAGCAAGCAGCCTCCTAAAGTTGTTGGACTGAATGCCATTGTAAATGACCCAAGAAATCCAAATTACTTTGCGTTGGGTGGTTCGGATGAATACGCACGCTTATACGATTTGAGAAACTGCGGCGGTGGTGCATTTTCGACGTCGAATAGAGTTCTTGATACTTTCTGCCCGCACCATTTGATCCAAACTAACAATTTCCATATCACGGGTTTGGCTTTCTCAAATTCAAGTGAGCTGCTAGTAACTTACAGTGATGAGCTTATTTATTTGTTTCAGAAGAATATGGGGTTAGGCCCTTCACCATTGACTGTGTCATCTGAGAATTTGTTGCGGAAACTTAAACGGCCACAGGTTTACTCAGGACATAGAAATTCAGCAACAGTTAAAGGTGTGAATTTCTTTGGCTCAAATTCTGAATATGTTGTGAGTGGCTCTGATTGTGGTCATATATATATTTGGAAGAAGAAGGGAGCTGTGCTTGTGAAGTTAATGGTGGGTGATCGGAATGTTGTGAATCATATCGAGCCCCATCCACATTTGCCTATTCTTGCTACGTGTGGCATTGAAAAAAATGTGAAGATTTGGACTCCTATGGCTTGTGATGTTCCTCCATTGCCTGATGACATTGAACAAATAATGGAGTCCAATAGGCAAGGAAGGGAAGACCACTCGAGGGTGACCCTTACTCCCGACGTTATCATGCATGTCCTGCGCCTGCAAAGAAGGCAAGCATCTGCATTTACAGAACGAAGATACAGCGCAGGCGATATCGGCAGCGATGAAGACAATGAATGGGAAGCTCAGAATCTGGAGTTCCTTGATGGTAATGTTTCTTTTGAAGAAGATTCAACAGAATATTCATCTGACTGTAACATCAGCTAG 3618 41.38 MDDFLDNIPSMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELENLEIRLADHEHELIEMNSNSEKLQQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYTEDGSLLEQVDKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKSQIQEALQRATFDSSSQVGIIFHVMDTFVHDSKCDDVPVLYRCNVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDITCSDVHTVGLVKYRDAYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGMLGTSEMDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGMDCELAEICSREIGTPRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTNDQKIVTSAADGKVIFHNMKVVAKMLGEHQGSVHELAVEPGSPHILYSCGEDGLVQHFDLRNSSAIKLFYCTSFAERSKQPPKVVGLNAIVNDPRNPNYFALGGSDEYARLYDLRNCGGGAFSTSNRVLDTFCPHHLIQTNNFHITGLAFSNSSELLVTYSDELIYLFQKNMGLGPSPLTVSSENLLRKLKRPQVYSGHRNSATVKGVNFFGSNSEYVVSGSDCGHIYIWKKKGAVLVKLMVGDRNVVNHIEPHPHLPILATCGIEKNVKIWTPMACDVPPLPDDIEQIMESNRQGREDHSRVTLTPDVIMHVLRLQRRQASAFTERRYSAGDIGSDEDNEWEAQNLEFLDGNVSFEEDSTEYSSDCNIS 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2343070 2358216 - CmoCh20G004950.1 Cmo20g00495 404812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00495 1205 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 776 808 - -
Cmo20g00495 1205 PANTHER VACUOLAR PROTON ATPASE A1 5 178 - -
Cmo20g00495 1205 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 808 IPR001680 GO:0005515
Cmo20g00495 1205 PANTHER VACUOLAR PROTON ATPASES 5 178 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo20g00495 1205 SMART WD40_4 854 894 IPR001680 GO:0005515
Cmo20g00495 1205 SMART WD40_4 811 853 IPR001680 GO:0005515
Cmo20g00495 1205 SMART WD40_4 1069 1108 IPR001680 GO:0005515
Cmo20g00495 1205 SMART WD40_4 1024 1066 IPR001680 GO:0005515
Cmo20g00495 1205 SMART WD40_4 769 808 IPR001680 GO:0005515
Cmo20g00495 1205 SMART WD40_4 966 1004 IPR001680 GO:0005515
Cmo20g00495 1205 SMART WD40_4 913 948 IPR001680 GO:0005515
Cmo20g00495 1205 Coils Coil 93 127 - -
Cmo20g00495 1205 Pfam WD domain, G-beta repeat 773 808 IPR001680 GO:0005515
Cmo20g00495 1205 Pfam WD domain, G-beta repeat 1029 1066 IPR001680 GO:0005515
Cmo20g00495 1205 Gene3D - 761 1109 IPR015943 GO:0005515
Cmo20g00495 1205 PANTHER VACUOLAR PROTON ATPASES 178 736 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo20g00495 1205 SUPERFAMILY WD40 repeat-like 768 1107 IPR036322 GO:0005515
Cmo20g00495 1205 Pfam V-type ATPase 116kDa subunit family 37 158 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo20g00495 1205 Pfam V-type ATPase 116kDa subunit family 162 736 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo20g00495 1205 PANTHER VACUOLAR PROTON ATPASE A1 178 736 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00864 Cmo20g00495 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01684 Cmo-Chr1:12686449 Cmo20g00495 Cmo-Chr20:2343070 3.66E-16 dispersed
Cmo05g00282 Cmo-Chr5:1227643 Cmo20g00495 Cmo-Chr20:2343070 5.45E-18 dispersed
Cmo05g00283 Cmo-Chr5:1229737 Cmo20g00495 Cmo-Chr20:2343070 1.32E-18 dispersed
Cmo12g00383 Cmo-Chr12:2370897 Cmo20g00495 Cmo-Chr20:2343070 8.10E-94 dispersed
Cmo19g00696 Cmo-Chr19:7351871 Cmo20g00495 Cmo-Chr20:2343070 0 dispersed
Cmo19g00770 Cmo-Chr19:7777696 Cmo20g00495 Cmo-Chr20:2343070 1.49E-140 transposed
Cmo02g00864 Cmo-Chr2:5255585 Cmo20g00495 Cmo-Chr20:2343070 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00495 K02154 - csv:101216514 1324.69