Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00502 ATGGAAGGCAGTGATTCAATCATCACCCTTTCATCAACTCCACCATCTCAATCTCCTTCCTCTTCTTCTTCTCCGGCACCGCCGCCGCCTGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCTGAGGGATGTGTATTGGCGCCCTATTTTCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGTGTTTTTGGCGCTAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGAGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCGAGTGCGAGGATCAGAGATCCTGTTTACGGATCAGCAGGTGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCAGAGGTCGTCAACATGCAATGCCAACAAGCCAATCTCGTGGCCTTCGTTTGCAGGGAATTAGCTCAATCTCATCAGTCTTCTTTTGATGATTTGAATGCCGACTCTCACAGTGGCTTATTCCACAGCATCAGCAGCCCAAGCTACTTCGATGATACCAATGTAAACCCACTGTGGGAACCTCTCTGGACATGA 591 50.25 MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPSYFDDTNVNPLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2396456 2398128 + CmoCh20G005020.1 Cmo20g00502 404819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00502 196 MobiDBLite consensus disorder prediction 1 19 - -
Cmo20g00502 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 11 193 - -
Cmo20g00502 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 193 - -
Cmo20g00502 196 Coils Coil 114 141 - -
Cmo20g00502 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cmo20g00502 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cmo20g00502 196 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00444 Cmo-Chr15:2017329 Cmo20g00502 Cmo-Chr20:2396456 4.46E-53 dispersed
Cmo20g00502 Cmo-Chr20:2396456 Cmo02g00023 Cmo-Chr2:137845 3.48E-51 dispersed
Cmo01g00564 Cmo-Chr1:2827611 Cmo20g00502 Cmo-Chr20:2396456 1.14E-76 wgd
Cmo13g00196 Cmo-Chr13:1406230 Cmo20g00502 Cmo-Chr20:2396456 2.65E-72 wgd
Cmo02g00870 Cmo-Chr2:5297039 Cmo20g00502 Cmo-Chr20:2396456 1.85E-100 wgd
Cmo20g00502 Cmo-Chr20:2396456 Cmo04g01315 Cmo-Chr4:6708105 6.65E-77 wgd
Cmo20g00502 Cmo-Chr20:2396456 Cmo04g00277 Cmo-Chr4:1399587 3.42E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11730 PF03195 LOB 2.50E-41 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00502 - - csv:101215067 294.664