Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00507 ATGTGGGACATCACATATCCTAGAAACACCTTCGGCGAAGATAGGAAGAAACAGAGAGCAAAGATGGGGAAGAAAGAAGCCCTTGTGATGCTGTTGATTATTGCTGTTCTGGGAAATGCGATTGGGATTAAGGAGGAAGCAGAAGCAGAAGAAGAAGAAGAATGGTGGAGAGAGAGAGAGGAAGAGAGGGAGTTTAGAAGTAAAGAACGGTTTCTGCTAGAGGATTCGAAGCGGGTGATAGAGACAGAAGCAGGAGAAATGAGGGTGATTAGGAGTCCGGCTTCAAGAATTCTTGACAGGCCCATGCATATCGGCTTCATCACCATGGAACCTAAGTCCCTGTTCGTCCCTCAGTATTTGGACTCCAGCTTGATTCTCTTTGTCCGCAGAGGGGAAGTGAAAGTGGGATTGATTTACAAAGACGAGTTAGCAGAGAGGAGGATGAAGGGCGGAGATGTGTACCGGATCCCAGCCGGTTCAGTATTTTACATGGTCAACGTAGGGGAAGGACAGAGACTTCAAATTATCTGCAGCATTGACAAATCTGAGAGCTTGAGTTATGGTACTTTCCAGTCCTTCTTCGTCGGCGGAGGAACCTATCCGGTATCAGTTCTAGCAGGTTTCGACCAGGATACATTGGCTACAGCATTTAATGTTTCCTATACAGAATTGAGGAGGATTCTATCAAGGCAACGACAGGGTCCAATCGTTTACGTCTCGGATACTGAATCGCCGGGGGTTTGGAGTAAGTTTCTGCAGGTGAAAGATGGAGAAAAAGGAAATCAAATATCTAACATCAATGAAAATGGCGAAGAAGCAGAGAAGAATAAGGCATGGTCATGGAGGAATCTCATGAGTTCGATCTTTGGAAACGAAAATCGGGACAAAACAAAAAGAACAAGAACAGGAAAATCCCCCGATTCGTACAACCTCTACGACAAAACCCCAGACTTCAGTAACGCCTACGGATGGAGCGTTGCCCTAGACGAGCACGAGTATTCTCCTCTAGGTCACTCCGGAATCGGAGTTTATCTCGTCAATCTCACAGCGGGATCCATGATGGCGCCGCACATAAATCCAACCGCGGCAGAGTACGGCATCGTCCTCAGAGGCACAGGCACAATACAGATCGTATATCCAAACGGAACCTCCGCCATGGACACAGAAGTAACCGAAGGGGACGTCTTCTGGGTTCCAAGATACTTCCCATTCTGCCAAATCGCATCGAGAACAGGTCCATTCGAGTTCTTCGGATTCACCACGTCGTCGCGCAAGAATCGACCGCAGTTCTTGGCCGGTGCGAATTCGATTTTCCACACTCTAAGAAGCTCGGCAGTGGCAACAGCATTCGACATAACAGAGGACGACCTCGACCGGTTGCTGAGCTTGCAGTACGAGGCGGTGATTCTGCCGTCAGCGGAGATTGCGCCGCCGCACAAGGAGGAGGAGAAGAGGAGGAGGAGAGAGGAAGGAAGGAGGGAGAGGGAACGGGAAGGCGAAAGGGAACGGGAAAGGGAAGAAGAGTGGACGAGGCGATTTGGAGCTCTAAGAGCTCCACCATTCTTCATCTCCTTCCTCTTTTGTAACCCTCGTTTCTTGATTCGGCGGCAGCTTATCTCATTCATCAATCTTCATCTTTTGAGGTTTGATTCTTATCTCATTCATCAATCTTCATCTTTTGAGTTTGTGGCATTTTTTAATGTTTGTTTCGGTCTAGGAGGATTGGTGTTCTGTTTCGCATTTGTTGAACGAGACGATGGTTGTTGCGATTATGTACAAGGTTACAATTTCAAAATGGGAAAAGAGAAGACTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAGTCTACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATCGACAAGCGTGTTATTGAAAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATATGCCTGGGTGTTGGACAAACTAAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCTTTGTGGAAGTTCGAGACCACCAAATACTACTGCACCGTTATTGATGCCCCTGGACATCGTGATTTCATTAAGAACATGATTACTGGTACCTCACAGGCCGATTGCGCTGTTCTCATTATTGATTCCACTACCGGTGGTTTTGAAGCCGGTATCTCTAAGGATGGTCAAACTCGTGAGCATGCTTTGCTTGCGTTTACTCTTGGTGTCAAGCAGATGATCTGCTGCTGCAATAAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGACGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGATACAACCCTGACAAAATCCCATTCGTGCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGGTCAACAAACCTCGACTGGTACAAGGGTCCAACCCTCCTCGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCGGACAAGCCACTCCGTCTTCCACTCCAGGATGTGTACAAGATTGGTGGTATTGGCACTGTACCCGTTGGACGTGTTGAGACTGGTGTACTCAAGCCTGGTATGGTCGTCACTTTTGGCCCATCTGGATTGACCACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCCAGAGGCTCTTCCTGGCGACAATGTCGGATTCAATGTGAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCTTCCAATTCAAAGGATGATCCTGCCAGGGAGGCTGCCAACTTCACATCTCAGGTCATTATCATGAACCACCCAGGGCAGATTGGCAATGGTTATGCCCCAGTTCTCGATTGCCACACCTCTCACATTGCCGTGAAGTTTGCTGAGATTCTGACCAAGATCGACAGGCGATCTGGTAAAGAACTTGAGAAGGAGCCGAAGTTCTTGAAAAATGGTGATGCGGGTATGATTAAGATGGTTCCCACCAAGCCCATGGTGGTGGAAACCTTCTCCCAGTACCCACCTCTTGGACGTTTTGCTGTGAGGGACATGAGACAGACCGTGGCTGTGGGAGTCATCAAGTCGGTCGAGAAGAAGGATCCAAGTGGTGCCAAGCTGGGTCTGCCTGAGGTTTACAAGTATAAATGTCGAAATAAAGACCTGATGGTTTTTCGTGGTGGTGGTGGTGCTGCTTTATCGAGTCTTTTTATCTACTTTTGTGATTATAGTTGTTGGCGTTGGTCATTATTAGGTACCCAGTCCCAGAATTGGGTGCTTGATAGACGGTGGCGCAGCTATATGGCTCAAAAGGTCTTTTTTTGTGTTGTTTGTTGTTTGGTCTTCTGCTCTTATCGCCCTGTTGCTCTAAAGTTTTCGAGTTCTATGTTTCTGCTGAGATACTCATAA 3399 47.6 MWDITYPRNTFGEDRKKQRAKMGKKEALVMLLIIAVLGNAIGIKEEAEAEEEEEWWREREEEREFRSKERFLLEDSKRVIETEAGEMRVIRSPASRILDRPMHIGFITMEPKSLFVPQYLDSSLILFVRRGEVKVGLIYKDELAERRMKGGDVYRIPAGSVFYMVNVGEGQRLQIICSIDKSESLSYGTFQSFFVGGGTYPVSVLAGFDQDTLATAFNVSYTELRRILSRQRQGPIVYVSDTESPGVWSKFLQVKDGEKGNQISNINENGEEAEKNKAWSWRNLMSSIFGNENRDKTKRTRTGKSPDSYNLYDKTPDFSNAYGWSVALDEHEYSPLGHSGIGVYLVNLTAGSMMAPHINPTAAEYGIVLRGTGTIQIVYPNGTSAMDTEVTEGDVFWVPRYFPFCQIASRTGPFEFFGFTTSSRKNRPQFLAGANSIFHTLRSSAVATAFDITEDDLDRLLSLQYEAVILPSAEIAPPHKEEEKRRRREEGRREREREGEREREREEEWTRRFGALRAPPFFISFLFCNPRFLIRRQLISFINLHLLRFDSYLIHQSSSFEFVAFFNVCFGLGGLVFCFAFVERDDGCCDYVQGYNFKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKLGLPEVYKYKCRNKDLMVFRGGGGAALSSLFIYFCDYSCWRWSLLGTQSQNWVLDRRWRSYMAQKVFFCVVCCLVFCSYRPVALKFSSSMFLLRYS 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2423378 2429719 + CmoCh20G005070.1 Cmo20g00507 404824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00507 1132 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 659 674 IPR031157 -
Cmo20g00507 1132 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 599 1031 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cmo20g00507 1132 Gene3D - 599 824 IPR027417 -
Cmo20g00507 1132 Pfam Elongation factor Tu GTP binding domain 603 819 IPR000795 GO:0003924|GO:0005525
Cmo20g00507 1132 CDD EF1_alpha_III 921 1024 - -
Cmo20g00507 1132 Gene3D Translation factors 921 1028 - -
Cmo20g00507 1132 Hamap Elongation factor Tu [tuf]. 600 1030 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cmo20g00507 1132 Gene3D Translation factors 827 914 - -
Cmo20g00507 1132 MobiDBLite consensus disorder prediction 479 504 - -
Cmo20g00507 1132 SUPERFAMILY Translation proteins 829 919 IPR009000 -
Cmo20g00507 1132 Pfam Elongation factor Tu domain 2 846 911 IPR004161 GO:0005525
Cmo20g00507 1132 PANTHER TRANSLATION FACTOR 599 1038 - -
Cmo20g00507 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 847 IPR027417 -
Cmo20g00507 1132 SMART Cupin_1_3 309 458 IPR006045 -
Cmo20g00507 1132 SMART Cupin_1_3 71 225 IPR006045 -
Cmo20g00507 1132 CDD cupin_7S_vicilin-like_C 316 467 - -
Cmo20g00507 1132 CDD EF1_alpha_II 828 918 - -
Cmo20g00507 1132 Pfam Elongation factor Tu C-terminal domain 920 1027 IPR004160 -
Cmo20g00507 1132 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 924 1027 IPR009001 -
Cmo20g00507 1132 CDD cupin_7S_vicilin-like_N 79 240 - -
Cmo20g00507 1132 Gene3D Jelly Rolls 59 248 IPR014710 -
Cmo20g00507 1132 PRINTS GTP-binding elongation factor signature 607 620 IPR000795 GO:0003924|GO:0005525
Cmo20g00507 1132 PRINTS GTP-binding elongation factor signature 702 713 IPR000795 GO:0003924|GO:0005525
Cmo20g00507 1132 PRINTS GTP-binding elongation factor signature 666 674 IPR000795 GO:0003924|GO:0005525
Cmo20g00507 1132 PRINTS GTP-binding elongation factor signature 746 755 IPR000795 GO:0003924|GO:0005525
Cmo20g00507 1132 PRINTS GTP-binding elongation factor signature 686 696 IPR000795 GO:0003924|GO:0005525
Cmo20g00507 1132 Pfam Cupin 74 221 IPR006045 -
Cmo20g00507 1132 Pfam Cupin 309 454 IPR006045 -
Cmo20g00507 1132 CDD EF1_alpha 607 825 - -
Cmo20g00507 1132 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 599 1038 - -
Cmo20g00507 1132 Gene3D Jelly Rolls 301 473 IPR014710 -
Cmo20g00507 1132 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 603 828 IPR000795 GO:0003924|GO:0005525
Cmo20g00507 1132 SUPERFAMILY RmlC-like cupins 72 462 IPR011051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01765 Cmo-Chr14:13654350 Cmo20g00507 Cmo-Chr20:2423378 7.72E-20 dispersed
Cmo17g00105 Cmo-Chr17:566104 Cmo20g00507 Cmo-Chr20:2423378 0 dispersed
Cmo17g00159 Cmo-Chr17:926792 Cmo20g00507 Cmo-Chr20:2423378 2.62E-06 dispersed
Cmo17g01132 Cmo-Chr17:9225831 Cmo20g00507 Cmo-Chr20:2423378 1.04E-44 dispersed
Cmo17g01171 Cmo-Chr17:9423545 Cmo20g00507 Cmo-Chr20:2423378 1.12E-22 dispersed
Cmo18g00045 Cmo-Chr18:282587 Cmo20g00507 Cmo-Chr20:2423378 4.90E-85 dispersed
Cmo19g00102 Cmo-Chr19:584875 Cmo20g00507 Cmo-Chr20:2423378 5.75E-13 dispersed
Cmo03g00792 Cmo-Chr3:6485047 Cmo20g00507 Cmo-Chr20:2423378 6.44E-48 transposed
Cmo02g00876 Cmo-Chr2:5316708 Cmo20g00507 Cmo-Chr20:2423378 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00507 K03231 - csv:101213221 881.708