Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00509 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCCATGGAAATTGTGAAGAGGGTCGCTGCAATTGCTGTTTATCATCCTCAACTTCTTCTTGTTCCTCAAATTCTTCATCAACTCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGCAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAAATTGCCTCTGCCTCTCCCTTTTCCCCCATGAACATGGCCACTTTTGACCTCCAGCCCCAGATCCTCTGCAAGGTCATCAATGTCCACCTACTTGCTAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTATTAGGCACTGGCGTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATAGAGCTGCTGATGGAGATGGGAGCGGAGGGTCGCCTACTAGATCCACACCTCACATGTTCTGTAAAACACTCACAGCGTCCGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTATACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAGCATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTCGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTCTTTTTAAGGGGCGAAAATGGAGAGTTAAGGTTGGGAATAAGACGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTGGGCAACCAAAATTCTTGTGCAAATGATCTTACTCGTGTGGTGAAAGCAGTTTCCACCAAGAGCGCATTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAATTTGTTGTATCTTGTCAGAAGTATGTGAAGAGCATCAACAATCCAGTGAACGTAGGCACAAGATTCAAAATGAGATTTGAGATGGACGATTCGCCAGAAAGGAGGTTTAATGGTGTAGTTGTCGGTATTGGTGACATGGATCCCTTTCGATGGTCGAACTCGAAATGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGCGTTTCGCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGAAGCCCCACCTAATAACGCCTTTAATGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAGTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATGGTATCGCCCTTTTACGGTTGTGATACCGCAAAACGCTCACTGGAGTTTGAGGTGCGATCTTCTGCACAACAAAATCAAGCGTCAGGTGGAGTTGAAAAGCTTAATATAGGTGATTATGTAACTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACAAACAAGAAAACCAGAGCCTAGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACCCATTTCAATCACCGAACTCGAGCTTTTATCACATGGCGTCAAATGGCGCCCGAAACATGTATTACCCTCATCGTGATATTTACAGTACTGGCCAAGCTGCCATGATGAGCTCAAATGATATCAATTTTCCAAGAGAGAGTGCCTTGTCCAACCCATCAGCAAAAATGGAAAGGGCTAATTCTACTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGACGAAAACGTGAACGAGAACCGAACTGGCTGTAAACTTTTCGGCTTTTCCTTGACTACAGAAACTGCTACAAACATGCAAAGTTCAGGGAAGAGAAGTTGTACGAAGGTTCACAAACAAGGCAGCCTAGTGGGAAGAGCTATTGATCTCTCTAGACTGAATGGCTATACTGATCTGCTTTCTGAACTCGAACGCCTGTTTAGCATGGAAGGACTCTTAAAAGATCCCGATAAAGGATGGCGTGTATTGTACACCGACAACGAGAACGACGTAATGGTGGTCGGGGATTATCCATGGCATGATTTCTGTGATGCTGTTTCGAAAATCCACATATACACAGAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGATCAAGCTGCTTTGTGTATGGAAGCATCAAAATCGTCTTCAGTGGGCCAACCTGATTCATCTCCAACAGTAGTAAGAGTTTAA 2340 44.91 MEIDLNQTASEVGKNAYCHGNCEEGRCNCCLSSSTSSCSSNSSSTPASSSTYLELWHACAGPLTSLPKKGNAVVYFPQGHLEQIASASPFSPMNMATFDLQPQILCKVINVHLLANKENDEVYTQLTLLPLPELLGTGVEGKELEELALNRAADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLTRVVKAVSTKSAFDVFYNPRAYHAQFVVSCQKYVKSINNPVNVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWSNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQEAPPNNAFNGRGGFMDFEDSVRSSKVLQGQENVGMVSPFYGCDTAKRSLEFEVRSSAQQNQASGGVEKLNIGDYVTSFTGFMESDRFLKVLQGQEICSLRPQTRKPEPSLGVWGKFNLSDNSFNPFQSPNSSFYHMASNGARNMYYPHRDIYSTGQAAMMSSNDINFPRESALSNPSAKMERANSTPPTLGSNMRNSKDENVNENRTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTEEEVEKMTNGVISDDTQSCLDQAALCMEASKSSSVGQPDSSPTVVRV 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2433984 2440115 - CmoCh20G005090.1 Cmo20g00509 404826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00509 779 ProSiteProfiles PB1 domain profile. 651 733 IPR000270 GO:0005515
Cmo20g00509 779 Pfam Auxin response factor 297 377 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo20g00509 779 Gene3D - 647 740 - -
Cmo20g00509 779 ProSiteProfiles B3 DNA-binding domain profile. 170 272 IPR003340 GO:0003677
Cmo20g00509 779 PANTHER AUXIN RESPONSE FACTOR 21 767 - -
Cmo20g00509 779 SUPERFAMILY DNA-binding pseudobarrel domain 164 281 IPR015300 -
Cmo20g00509 779 Pfam AUX/IAA family 627 736 IPR033389 -
Cmo20g00509 779 Gene3D - 334 403 - -
Cmo20g00509 779 MobiDBLite consensus disorder prediction 590 619 - -
Cmo20g00509 779 SUPERFAMILY CAD & PB1 domains 653 729 - -
Cmo20g00509 779 SMART B3_2 170 272 IPR003340 GO:0003677
Cmo20g00509 779 Gene3D - 168 272 IPR015300 -
Cmo20g00509 779 Pfam B3 DNA binding domain 170 271 IPR003340 GO:0003677
Cmo20g00509 779 CDD B3_DNA 168 270 IPR003340 GO:0003677
Cmo20g00509 779 MobiDBLite consensus disorder prediction 590 623 - -
Cmo20g00509 779 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 767 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00880 Cmo20g00509 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01295 Cmo-Chr3:9773108 Cmo20g00509 Cmo-Chr20:2433984 9.19E-144 dispersed
Cmo07g00215 Cmo-Chr7:1076631 Cmo20g00509 Cmo-Chr20:2433984 3.02E-141 dispersed
Cmo20g00509 Cmo-Chr20:2433984 Cmo10g00015 Cmo-Chr10:102271 4.93E-128 dispersed
Cmo02g00880 Cmo-Chr2:5451607 Cmo20g00509 Cmo-Chr20:2433984 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11731 PF02309 AUX_IAA 8.10E-08 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00509 - - cmo:103501935 1392.1