Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00519 ATGGCGAAGGACGTTGAAGCAGCCGAGCAAGGCGAATTCCACGGCAAGGACTACCAAGACCCACCCCCCGCCCCTCTAATCGACCCCGACGAGCTCACCAAATGGTCCCTTTACCGAGCCGCCATCGCCGAGTTCATCGCTACTCTCCTCTTCCTTTACGTCACCGTTTTGACCGTCATCGGCTACTCCCACCAAAGCGACCCTAACGTCTCCAAAGACCCATGTAACGGCGTCGGAATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCAGCTGTCACTTTCGGCCTCTTTTTAGCTCGTAAGGTGTCCCTCGTTCGAGCTTTGTTGTATATAATTGCTCAATGTGCCGGCGCTATCTGCGGCTGTGGCTTGGTCAAGGCCTTCCAGTCCGCCTACTATGTTAGGTATAACGGCGGCGCTAATATGCTCGCCGATGGATACAACAAAGGCACTGGTTTGGGAGCTGAAATCATCGGTACATTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCCCATGTTCCTGTCTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATGGTTCACTTGGCTACAATCCCCATCACCGGAACTGGTATTAACCCAGCAAGAAGCTTCGGAGCTGCTGTCATATTCAACACAGAGAAGGCCTGGGATGATCAATGGATTTTCTGGGTTGGACCATTCATCGGAGCTGCCATTGCTGCCATTTACCACCATGATGGTGGAATTGGATCTCTCAAATTGTCGCTGCCTTCGTCCCAGCCTCCCCTGCCTCGCCGGAGTTCATCAAGAACATCAATTATTAGCACTGGAAATTACCCATGTAACGGCGTCGGAATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCAGCTGTCACTTTCGGCCTCTTTTTAGCTCGTAAGGTGTCCCTCGTTCGAGCTTTGTTGTATATAATTGCTCAATGTGCCGGCGCTATCTGCGGCTGTGGCTTGGTCAAGGCCTTCCAGTCCGCCTACTATGTTAGGTATAACGGCGGCGCTAATATGCTCGCCGATGGATACAACAAAGGCACTGGTTTGGGAGCTGAAATCATCGGTACATTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCCCATGTTCCTGTCTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATGGTTCACTTGGCTACAATCCCCATCACCGGAACTGGTATTAACCCAGCAAGAAGCTTCGGAGCTGCTGTCATATTCAACACAGAGAAGGCCTGGGATGATCAATGGATTTTCTGGGTTGGACCATTCATCGGAGCTGCCATTGCTGCCATTTACCACCAGTATGTTCTCAGAGCTGGCGCCATTAAAGCTCTTGGATCCTTCAGAAGCAACGCTTGA 1542 51.95 MAKDVEAAEQGEFHGKDYQDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPNVSKDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVKAFQSAYYVRYNGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNTEKAWDDQWIFWVGPFIGAAIAAIYHHDGGIGSLKLSLPSSQPPLPRRSSSRTSIISTGNYPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVKAFQSAYYVRYNGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNTEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2483693 2487193 - CmoCh20G005190.1 Cmo20g00519 404836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00519 513 ProSitePatterns MIP family signature. 333 341 IPR022357 -
Cmo20g00519 513 PANTHER AQUAPORIN PIP2-4-RELATED 1 267 - -
Cmo20g00519 513 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 299 513 IPR034294 -
Cmo20g00519 513 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 TIGRFAM MIP: MIP family channel proteins 306 493 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 Gene3D Glycerol uptake facilitator protein. 290 513 IPR023271 -
Cmo20g00519 513 Gene3D Glycerol uptake facilitator protein. 24 268 IPR023271 -
Cmo20g00519 513 SUPERFAMILY Aquaporin-like 297 499 IPR023271 -
Cmo20g00519 513 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 CDD MIP 39 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 PANTHER AQUAPORIN PIP2-4-RELATED 299 513 - -
Cmo20g00519 513 CDD MIP 304 497 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 Pfam Major intrinsic protein 303 494 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo20g00519 513 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cmo20g00519 513 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 267 IPR034294 -
Cmo20g00519 513 SUPERFAMILY Aquaporin-like 31 266 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00893 Cmo20g00519 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00519 Cmo-Chr20:2483693 Cmo03g01240 Cmo-Chr3:9559511 7.23E-124 dispersed
Cmo02g00893 Cmo-Chr2:5507658 Cmo20g00519 Cmo-Chr20:2483693 5.02E-146 wgd
Cmo20g00519 Cmo-Chr20:2483693 Cmo03g01238 Cmo-Chr3:9553475 4.67E-122 wgd
Cmo20g00519 Cmo-Chr20:2483693 Cmo04g02700 Cmo-Chr4:19632374 7.31E-124 wgd
Cmo20g00519 Cmo-Chr20:2483693 Cmo07g00971 Cmo-Chr7:4762813 4.95E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00519 K09872 - csv:101215300 502.671