Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00522 ATGGCCATGGCTATAGCTCATCACAGGGAGAGTAGTAGTGGGAGCATAACCAGGCATCTTGACAGTACTGGAAAGTACGTTCGATACACTTCAGAGCAGGTGGAAGCTCTTGAGCGAGTCTATGCTGAGTGCCCGAAACCAAGTTCTCTTCGACGGCAGCAGCTCGTCCGGGAGTGCCCAATTCTTTCCAACATAGAGCCTAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTAAATGCTATGAACAAGTTGTTGATGGAGGAGAATGATCGGCTTCAGAAACAAGTTTCACAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACCGATGCAAGCTGCGATTCTGTGGTCACCACTCCTCAGCCCTCTCGACGAGATGCTAATAACGCAGCTGGACTCCTTTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATATTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGTCTTCAAAGATTGCTGAGATCCTTAAAGATCGTCCTTCGTGGTTTCGTGATTGTCGGAGCCTCGAGGTTTTTACCATGTTTCCAGCTGGAAACGGTGGGACAATTGAACTTGTTTATACACAGGTGTATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATACACAACAACTTTAGAAAATGGCAGCCTTGTGGTTTGCGAGAGATCACTCTCTGGTTCTGGTGCTGGTCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGTTACCTGATTCGACCATGTGAGGGTGGTGGATCCATCATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACTATAGCAGCATTGCGGTACATTAGGCAAATAGCTCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTGGGCCGGCAACCTGCTGTTTTGCGAACTTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAACGGATGGTCATTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTTGCTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACTTATCCTGGGGGTGTTCTTTGTGCTAAGGCATCCATGCTACTCCAAAATGTTTCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACATCGCTCAGAATGGGCTGATTTCAACATTGATGCGTACTCTGCGGCAACCCTTAAAGCCAATTCATACGCATATCCTGGGATGAGACCCACGAGGTTTACTGGTAGCCAAATCATCATGCCACTTGGTCACACAATCGAGAATGAAGAGTTGCTTGAAGTAATTCGACTTGAGGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGGGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGAGCCTGTTCAGAACTCATTTTTGCACCTATTGATGAGATGTTTCCAGACGACGCCCCGTTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGATCAAGTGACGCGAAAGGTAGTCAACGTACTCTGGACCTAACATCAAGTCTTGAGGTGGGCTGTGGAACTAGCAATGCTGCTGGAGATGCATCATCAAGTCAGAGCTCTAGATCAGTGTTAACTATTGCATTCCAGTTTCCATTCGAAAGCAGCATGCAGGACAATGTTACAAACATGGCACACCAGTACGTACGAAGCGTCATTTCCTCAGTGCAACGAGTTGCAATGGCCATATCTCCTTCTGGGGGCAGTCCAGCACTGGGTCCAAAGCTGTCTCCTGGTTCCCCAGAAGCTCTTACTCTAGCACACTGGATATGCAAGAGCTATAGTTTCCAACTGGGATCAGAGTTGATCAGGTCGGATTCGTTGGAAAACGAATCCGTGTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTTAAGCAGGCACTGCCTGTTTTCCTGTTTGCAAACCAATCTGGTCTTGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAGATCTTTGACGAGTCTGGTCGCAAAGCTCTGTGTTCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTGCCTGGTGGAATATGTGCATCGACCATGGGGCGACATGTTTCATACGAACAAGCCATTGCGTGGAAAGTCCTTGAGGCAGACGAGACGACGGTCCATTGCCTTGCCTTCTCATTCATCAACTGGTCTTTTGTTTGA 2529 46.7 MAMAIAHHRESSSGSITRHLDSTGKYVRYTSEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNAAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLESSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLAVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVSPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIENEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRSSDAKGSQRTLDLTSSLEVGCGTSNAAGDASSSQSSRSVLTIAFQFPFESSMQDNVTNMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSFQLGSELIRSDSLENESVLKNLWNHQDAILCCSLKQALPVFLFANQSGLDMLETTLVALQDITLDKIFDESGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTVHCLAFSFINWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2503759 2510754 + CmoCh20G005220.1 Cmo20g00522 404839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00522 842 CDD START_ArGLABRA2_like 160 375 - -
Cmo20g00522 842 Pfam MEKHLA domain 697 841 IPR013978 -
Cmo20g00522 842 SMART START_1 164 374 IPR002913 GO:0008289
Cmo20g00522 842 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cmo20g00522 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 842 IPR044830 GO:0003700
Cmo20g00522 842 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Cmo20g00522 842 Pfam Homeodomain 26 83 IPR001356 GO:0003677
Cmo20g00522 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 842 - -
Cmo20g00522 842 CDD bZIP 77 116 - -
Cmo20g00522 842 SMART HOX_1 22 88 IPR001356 GO:0003677
Cmo20g00522 842 CDD homeodomain 25 85 IPR001356 GO:0003677
Cmo20g00522 842 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Cmo20g00522 842 Coils Coil 80 121 - -
Cmo20g00522 842 SUPERFAMILY Bet v1-like 164 376 - -
Cmo20g00522 842 Gene3D - 201 380 IPR023393 -
Cmo20g00522 842 Pfam START domain 165 372 IPR002913 GO:0008289
Cmo20g00522 842 Gene3D - 19 91 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00896 Cmo20g00522 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00742 Cmo-Chr17:7362109 Cmo20g00522 Cmo-Chr20:2503759 0 dispersed
Cmo12g00825 Cmo-Chr12:7468484 Cmo20g00522 Cmo-Chr20:2503759 0 transposed
Cmo13g00257 Cmo-Chr13:2131711 Cmo20g00522 Cmo-Chr20:2503759 1.87E-39 wgd
Cmo02g00896 Cmo-Chr2:5524257 Cmo20g00522 Cmo-Chr20:2503759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11733 PF01852 START 1.60E-46 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00522 K09338 - csv:101215773 1602.42