Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00525 | ATGAAAGAAGCAGAGAAAAGCTTAGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTTTTCTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCCTCACTCAGAATCCCGCCTCTTATTCTTTGTCGAGTGCTCGCTGTTAAGTTCTTGGCTGACCCTGAAACGGATGAAGTTTTTGCTAATGTAAGTTTGGTTCCACTGGCGAACAACGACCTCAATTTCGAGGAAGAGGGTGGTTTTGGGGGTAATGGGTCGGATAATAACATGGAGAAGCCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCTAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGACTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCTAAGGATGTTCACGGTGAGGTTTGGAAGTTCCGGCATATTTACAGGGGAACACCTCGCCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTGAATCAGAAAAAACTCGTCGCCGGCGATTCTATTGTTTTTCTAAGATCCAAAAATGGCGACCTCTGCGTCGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCCGTCGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATTGTTTCCCCCCATGTGGTGGATTGACGATGTTTCTGAGAGACGAAGACAACAACAAGTTGAGTAGAAAAGGGTCTGTAAGTTCCAGTGGCGGCGGTGGGAATTTGAGGGGAAAAAGCAAAATAAGGCCGGAATCAGTGATCGAAGCAGCGGCGCTTGCGGCGAGTGGGCAGCCATTTGAGGTGGTTTATTACCCTCGTGCCAGCACGCCGGAGTTCTGTGTCAAGGCCTCATCGGTGCGAGCTGCCATGAGGATCCAATGGTGCTCTGGTATGAGATTCAAAATGCCATTTGAAACAGAGGATTCTTCTCGGATCAGTTGGTTCATGGGAACCACTTCCTCTGTTCAAGTGGCTGACCCAATCCGTTGGCCTAATTCTCCATGGCGGCTCCTCCAGGTGACATGGGATGAGCCAGATTTGCTGCAAAATGTGAAGCGGGTTAGCCCGTGGTTGGTCGAGCTCGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCGTCGCCGAGAAAGAAGTTTCGACTGCCACAGCACCCAGACGTTCCTCTCGACAGCCAATTCCCGCTGTCGTCGTCGTCGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCACTTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTGGGGCTGGTTCCATCCAGTTTTCAGCAGCTACATTTTCACTCTAGATTTTCCAATACAGACCATACTCGGAGCTCATCGGCATTGCTTAACGGGGAAAAGACCGGTCCGAAATTGGAACGATCCGACTCGGTGAAGAAGAAGCATCAGTTTGTACTCTTTGGTCAACCTATACTTACTGAACAGCAAATCTGTTGCAGCTCTTCTAGTGACATTCATCAAGTTTCTCCAAACAAGTCAGACACCAAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCGGAAGACGTGGGTCGAACGCTCAACCTTTCAGTCATCGGCTCGTACGAAGAACTATACAGGAGGCTAGCCAACATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTCTTGTATCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGACAAACCATTCAGTGATTTCATCAAAACAGCTCGAAGACTAACGATTTTAACAGACGAATCGGGTTCCAACAAGATGGGAAGAAGGACATTGATGGATGGCGTCCTAAGTGGTGAGAATGCACGACTAGATGCCTCAAACAAGACTGGTCCCTTGAGCATATTGGCCTAG | 2031 | 49.48 | MKEAEKSLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLILCRVLAVKFLADPETDEVFANVSLVPLANNDLNFEEEGGFGGNGSDNNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAVDHPYGWNPGGGNCFPPCGGLTMFLRDEDNNKLSRKGSVSSSGGGGNLRGKSKIRPESVIEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTTSSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSSPRKKFRLPQHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRFSNTDHTRSSSALLNGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTKLGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSNKMGRRTLMDGVLSGENARLDASNKTGPLSILA | 676 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 2533242 | 2535679 | - | CmoCh20G005250.1 | Cmo20g00525 | 404842 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00525 | 676 | Gene3D | - | 110 | 214 | IPR015300 | - | |
Cmo20g00525 | 676 | Pfam | B3 DNA binding domain | 112 | 213 | IPR003340 | GO:0003677 | |
Cmo20g00525 | 676 | MobiDBLite | consensus disorder prediction | 252 | 272 | - | - | |
Cmo20g00525 | 676 | SMART | B3_2 | 112 | 214 | IPR003340 | GO:0003677 | |
Cmo20g00525 | 676 | MobiDBLite | consensus disorder prediction | 492 | 515 | - | - | |
Cmo20g00525 | 676 | Gene3D | - | 561 | 646 | - | - | |
Cmo20g00525 | 676 | CDD | B3_DNA | 111 | 212 | IPR003340 | GO:0003677 | |
Cmo20g00525 | 676 | SUPERFAMILY | DNA-binding pseudobarrel domain | 108 | 216 | IPR015300 | - | |
Cmo20g00525 | 676 | Pfam | Auxin response factor | 282 | 365 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cmo20g00525 | 676 | Gene3D | - | 320 | 393 | - | - | |
Cmo20g00525 | 676 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 2 | 548 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo20g00525 | 676 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 556 | 650 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo20g00525 | 676 | ProSiteProfiles | PB1 domain profile. | 561 | 641 | IPR000270 | GO:0005515 | |
Cmo20g00525 | 676 | ProSiteProfiles | B3 DNA-binding domain profile. | 112 | 214 | IPR003340 | GO:0003677 | |
Cmo20g00525 | 676 | PANTHER | AUXIN RESPONSE FACTOR | 2 | 548 | - | - | |
Cmo20g00525 | 676 | PANTHER | AUXIN RESPONSE FACTOR | 556 | 650 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00900 | Cmo20g00525 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g00112 | Cmo-Chr12:650533 | Cmo20g00525 | Cmo-Chr20:2533242 | 8.56E-104 | dispersed | |
Cmo15g00471 | Cmo-Chr15:2129289 | Cmo20g00525 | Cmo-Chr20:2533242 | 0 | dispersed | |
Cmo20g00525 | Cmo-Chr20:2533242 | Cmo04g00721 | Cmo-Chr4:3582996 | 4.83E-83 | dispersed | |
Cmo02g00900 | Cmo-Chr2:5550636 | Cmo20g00525 | Cmo-Chr20:2533242 | 0 | wgd | |
Cmo20g00525 | Cmo-Chr20:2533242 | Cmo03g01235 | Cmo-Chr3:9536729 | 0 | wgd | |
Cmo20g00525 | Cmo-Chr20:2533242 | Cmo04g02692 | Cmo-Chr4:19603016 | 0 | wgd | |
Cmo20g00525 | Cmo-Chr20:2533242 | Cmo07g00959 | Cmo-Chr7:4686626 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11734 | PF02362 | B3 | 6.60E-22 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00525 | - | - | bhj:120088819 | 1170.99 |