Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00525 ATGAAAGAAGCAGAGAAAAGCTTAGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTTTTCTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCCTCACTCAGAATCCCGCCTCTTATTCTTTGTCGAGTGCTCGCTGTTAAGTTCTTGGCTGACCCTGAAACGGATGAAGTTTTTGCTAATGTAAGTTTGGTTCCACTGGCGAACAACGACCTCAATTTCGAGGAAGAGGGTGGTTTTGGGGGTAATGGGTCGGATAATAACATGGAGAAGCCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCTAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGACTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCTAAGGATGTTCACGGTGAGGTTTGGAAGTTCCGGCATATTTACAGGGGAACACCTCGCCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTGAATCAGAAAAAACTCGTCGCCGGCGATTCTATTGTTTTTCTAAGATCCAAAAATGGCGACCTCTGCGTCGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCCGTCGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATTGTTTCCCCCCATGTGGTGGATTGACGATGTTTCTGAGAGACGAAGACAACAACAAGTTGAGTAGAAAAGGGTCTGTAAGTTCCAGTGGCGGCGGTGGGAATTTGAGGGGAAAAAGCAAAATAAGGCCGGAATCAGTGATCGAAGCAGCGGCGCTTGCGGCGAGTGGGCAGCCATTTGAGGTGGTTTATTACCCTCGTGCCAGCACGCCGGAGTTCTGTGTCAAGGCCTCATCGGTGCGAGCTGCCATGAGGATCCAATGGTGCTCTGGTATGAGATTCAAAATGCCATTTGAAACAGAGGATTCTTCTCGGATCAGTTGGTTCATGGGAACCACTTCCTCTGTTCAAGTGGCTGACCCAATCCGTTGGCCTAATTCTCCATGGCGGCTCCTCCAGGTGACATGGGATGAGCCAGATTTGCTGCAAAATGTGAAGCGGGTTAGCCCGTGGTTGGTCGAGCTCGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCGTCGCCGAGAAAGAAGTTTCGACTGCCACAGCACCCAGACGTTCCTCTCGACAGCCAATTCCCGCTGTCGTCGTCGTCGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCACTTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTGGGGCTGGTTCCATCCAGTTTTCAGCAGCTACATTTTCACTCTAGATTTTCCAATACAGACCATACTCGGAGCTCATCGGCATTGCTTAACGGGGAAAAGACCGGTCCGAAATTGGAACGATCCGACTCGGTGAAGAAGAAGCATCAGTTTGTACTCTTTGGTCAACCTATACTTACTGAACAGCAAATCTGTTGCAGCTCTTCTAGTGACATTCATCAAGTTTCTCCAAACAAGTCAGACACCAAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCGGAAGACGTGGGTCGAACGCTCAACCTTTCAGTCATCGGCTCGTACGAAGAACTATACAGGAGGCTAGCCAACATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTCTTGTATCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGACAAACCATTCAGTGATTTCATCAAAACAGCTCGAAGACTAACGATTTTAACAGACGAATCGGGTTCCAACAAGATGGGAAGAAGGACATTGATGGATGGCGTCCTAAGTGGTGAGAATGCACGACTAGATGCCTCAAACAAGACTGGTCCCTTGAGCATATTGGCCTAG 2031 49.48 MKEAEKSLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLILCRVLAVKFLADPETDEVFANVSLVPLANNDLNFEEEGGFGGNGSDNNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAVDHPYGWNPGGGNCFPPCGGLTMFLRDEDNNKLSRKGSVSSSGGGGNLRGKSKIRPESVIEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTTSSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSSPRKKFRLPQHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRFSNTDHTRSSSALLNGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTKLGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSNKMGRRTLMDGVLSGENARLDASNKTGPLSILA 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2533242 2535679 - CmoCh20G005250.1 Cmo20g00525 404842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00525 676 Gene3D - 110 214 IPR015300 -
Cmo20g00525 676 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Cmo20g00525 676 MobiDBLite consensus disorder prediction 252 272 - -
Cmo20g00525 676 SMART B3_2 112 214 IPR003340 GO:0003677
Cmo20g00525 676 MobiDBLite consensus disorder prediction 492 515 - -
Cmo20g00525 676 Gene3D - 561 646 - -
Cmo20g00525 676 CDD B3_DNA 111 212 IPR003340 GO:0003677
Cmo20g00525 676 SUPERFAMILY DNA-binding pseudobarrel domain 108 216 IPR015300 -
Cmo20g00525 676 Pfam Auxin response factor 282 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo20g00525 676 Gene3D - 320 393 - -
Cmo20g00525 676 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 548 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo20g00525 676 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 556 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo20g00525 676 ProSiteProfiles PB1 domain profile. 561 641 IPR000270 GO:0005515
Cmo20g00525 676 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Cmo20g00525 676 PANTHER AUXIN RESPONSE FACTOR 2 548 - -
Cmo20g00525 676 PANTHER AUXIN RESPONSE FACTOR 556 650 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00900 Cmo20g00525 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00112 Cmo-Chr12:650533 Cmo20g00525 Cmo-Chr20:2533242 8.56E-104 dispersed
Cmo15g00471 Cmo-Chr15:2129289 Cmo20g00525 Cmo-Chr20:2533242 0 dispersed
Cmo20g00525 Cmo-Chr20:2533242 Cmo04g00721 Cmo-Chr4:3582996 4.83E-83 dispersed
Cmo02g00900 Cmo-Chr2:5550636 Cmo20g00525 Cmo-Chr20:2533242 0 wgd
Cmo20g00525 Cmo-Chr20:2533242 Cmo03g01235 Cmo-Chr3:9536729 0 wgd
Cmo20g00525 Cmo-Chr20:2533242 Cmo04g02692 Cmo-Chr4:19603016 0 wgd
Cmo20g00525 Cmo-Chr20:2533242 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11734 PF02362 B3 6.60E-22 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00525 - - bhj:120088819 1170.99