Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00529 ATGGCTTTTGGTAGTTCTAAATCCGTTAGGTTCCAAGACACTCTTGAATCATCTACCTTGCCCGCTATCAATGGTGGCGGTGTGACGAAGATCGTATACAACATCGATGGCACACAAATACCGGATTCTAGCAGCAAGAGAACTGCATCTTCTGGGAAGTCTGGAAGATCATTAAGAGCTAAGGTTTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTTCAACGAAAAATATTGGATCCTAGAGGACAAGCGATAAGGCGATGGAATAAGATATTTTTAGTAGCTTGTTTAGTCTCGTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTATGGTACGGGACGAGGAGTGCATCGATATAGGAGTAGGTGTCGAAGTTGTCCTCACGACTATAAGATCGATAGCTGATCTTTTCTACACAATTCAGATTTTTGCTAAGTTTCGTACAGCTTATGTTGCGCCTTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATAAGGTATCTACGCCATGGTTTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCTCAGGTACTGATCTGGATTGTCATCCCCAACCTTAGTGGTTCGACAATGACGAACACCAAGAACTTCCTAAGGTTCTTTCTCATATTTCAGTACCTCCCAAGGCTTTTTCTCATATTTCCGCTCTCGACCCAAATCGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACTTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCATGCTGGTACCTTCTTTCGATCGAGCGACAAGAAGCATGTTGGAGAAGACTTTGTACGGTTGAAAAATCTTGTAATGATGGATTCTTCGACTGTCATAAGGTCGATGACCCTCGAAGGGATTCGTGGTTTAATACGAGCAACATTAGAACTTTATGCAATCCAGATGATCCCTTTTATCAATTCGGTATATATGGCGACGCGATTACTTTCCATGTCACGACCTCTCCATTTTTCAACAAGTACTTCTATTGTCTTTGGTGGGGCCTGAAGAATCTCAGTTCTTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGTGAAATAATTTTTGCCATAATTGTAGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATACCTCCAATCGACGACTGTTCGATTGGAAGAGTGGAGAATAAGAAGAACCGATACAGAACAATGGATGCATCATAGACAGCTACCTCCCGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGATAGCAACACGAGGCGTCGATGAAGAAGCCCTTCTTAGAAGCCTTCCCTTGGATCTCCGTAGAGACATCAAACGTCACCTTTGCCTCGACCTTGTTCGACGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTCGATGCCATATGCGAGAGACTTAAACCTGCGTTGAGTACAGAAGGCACGTTTCTCGTTCGAGAAGGCGACCCCGTCAATGAAATGTTGTTTATAATCAGAGGTCATCTTGATTCATACACCACGAATGGCGGTAGAACTGGATTTTTCAACTCCTGTCGTATTGGCCCGGGCGATTTCTGTGGTGAGGAGCTGCTAACTTGGGCGCTCGACCCTCGTCCAAGCATTGTACTTCCTTCTTCGACTCGAACTGTCAAAGCCATCTCTGAGGTAGAAGCATTTGCTCTCATAGCAGAGGATTTGAAATTCGTATCCTCCCAGTTCAGAAGACTCCATAGCAAACAACTGAGACACAAGTTTCGATTTCACTCGCATCAATGGCGAACGTGGGCTGCATGCTTTGTTCAAGCAGCATGGCGGCGATATAAGAGACGTAAAGAACGAGCTGAGCTCAGGGCTAGAGAGAGCTATCCAGCTACCAAAGTCGAGTCTCCACATTCACCACCGATGGCATCGAACTTGGATTCACGTTCGGGAAATGCTCGAAGGGGTATGAATAAGCGTTCTGTATCGGATGCTGGGGTCGTAAGCTCGTTGCAAAAGCCAGAAGAGCCCGATTTCTCCATTGTTGAGGAATGA 2103 44.6 MAFGSSKSVRFQDTLESSTLPAINGGGVTKIVYNIDGTQIPDSSSKRTASSGKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQAIRRWNKIFLVACLVSLFVDPLFFYLPMVRDEECIDIGVGVEVVLTTIRSIADLFYTIQIFAKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCTVEKSCNDGFFDCHKVDDPRRDSWFNTSNIRTLCNPDDPFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWIATRGVDEEALLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSIVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFHSHQWRTWAACFVQAAWRRYKRRKERAELRARESYPATKVESPHSPPMASNLDSRSGNARRGMNKRSVSDAGVVSSLQKPEEPDFSIVEE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2559226 2563617 - CmoCh20G005290.1 Cmo20g00529 404846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00529 700 MobiDBLite consensus disorder prediction 641 700 - -
Cmo20g00529 700 Gene3D Helix hairpin bin 407 471 - -
Cmo20g00529 700 MobiDBLite consensus disorder prediction 654 684 - -
Cmo20g00529 700 CDD CAP_ED 480 611 IPR000595 -
Cmo20g00529 700 SUPERFAMILY cAMP-binding domain-like 410 605 IPR018490 -
Cmo20g00529 700 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Cmo20g00529 700 SUPERFAMILY Voltage-gated potassium channels 80 402 - -
Cmo20g00529 700 Gene3D Jelly Rolls 478 598 IPR014710 -
Cmo20g00529 700 Gene3D - 85 404 - -
Cmo20g00529 700 SMART cnmp_10 480 611 IPR000595 -
Cmo20g00529 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 699 - -
Cmo20g00529 700 Pfam Ion transport protein 89 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo20g00529 700 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo20g00529 700 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo20g00529 700 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo20g00529 700 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo20g00529 700 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo20g00529 700 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo20g00529 700 PANTHER - 7 699 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00862 Cmo-Chr12:7836426 Cmo20g00529 Cmo-Chr20:2559226 0 dispersed
Cmo16g00865 Cmo-Chr16:4610071 Cmo20g00529 Cmo-Chr20:2559226 6.79E-127 dispersed
Cmo02g00904 Cmo-Chr2:5575654 Cmo20g00529 Cmo-Chr20:2559226 0 wgd
Cmo20g00529 Cmo-Chr20:2559226 Cmo03g01233 Cmo-Chr3:9516122 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00529 K05391 - csv:101210775 1319.68