Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00530 ATGTCAGAAGATACAATGAAGCGCGAAGTGGCAACCACCATTATCTCTTTAATAAGCTTTATCTTGATGCAACAAGCCTTTTGTGCTGACACTTACGATACATCCACCCCTGGCAACTGGACGTGTAGATGTTTTTCTCCATACCAAGAAAATCAGAAATTAACACTTGGTGCAAACTGTTCTACATCTTGTTCATGTACGCAAGATGTTGGGGTAATTGGAATGTGGACATGCATATGTGTAACCGATGGCTTCCCAAAAGTTGCAGCCAATCCCCGTGATTCTGACTGTTTTACCTCCTGCAACTGCTCTTCTGGACTGCCTCCGGAGTCACCATCTTTTAAAAGGCATATTTCGAGCAATGTGGTTGTGATTATTCTCTCACTATGTGTAATAATCATAACATTAGCATTCTTCATCTTAGTGGTTTGCTATCTTTGTCGAAGGGACAAGTGCCGTGCTCAAACTCCAATATTTTCGTTAGAAAAGCTAATGAGCTACAACAGCTTGACCAACTTAATTAGTCACAAGAGTTCTTCACCACCAGATAGTAAGGTTATGATGGGTTCCCCTGTGAATAACATCAAAGGATGCTTTTTCATGAACCAATGCTTGTTGAGGACAAAATCTAGGAGTCTGTGTGGGATAATCATCCAATTCTCATACTCGGAGTTAGAAAATGCAACAAATAAGTTTTCAAGCTCCCATCTTGTTGGACGTGGAGGAAGTAGTTTTGTTTATCGTGGTGAGTTGAAGGACAGTAGAACAGTGGCAGTAAAGCGGCTCAATATTCAAGGAGGACCGGATGTGGACTACTTGTTCTTAACAGAAATACAATTGTTATCAAGACTTCATCATTGTCACGTGGTGCCTCTACTTGGTTATTGCACAGAATCAAGGGGGAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATTTAAGAGACTGTTTGGATGCAGCTTCAGGGGAAAAAATGGATTGGAGTACTCGTGTTACAATTGCTTTAGGAGCTGCAAGAGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTTTGCATAGGGATGTCAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTTGGTATGGCTACAAGGTTAAGAGGTGATGATCTTCCTAGCTGTTCCAGTTCTCCTGCAAGAATGCAGGGGACTTTTGGGTATTTTGCACCGGAGTATGCAATTGTTGGACGAGCCTCTTTGAAGTCAGATGTCTTTAGTTTTGGAGTAGTTCTTCTCGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGCAAGCAAAGGAGAGGAAAGCCTTGCAATATGGGCTGCGCCCCGATTGCAAAATAGTAGGCGAGTCATTACCGAGTTGCCCGATCCGCATTTAGATGGACTGTTCCCGGAGGAAGAGATGCAAATAATGGCTTATTTAGCAAAGGAGTGCTTGCTGTTGGACCCTGATGCTAGACCCACCATGACTGAAGTTGTTCAAGTACTTTCAAACATAGCTCCCGATAAATCAAGAAGGAATAACATTTCTGCAAACGTTTTTCAGGGGAGACTGTCAGCCTGTTGTGAGGAGAGTGTACGAGACAGCGTAAGGGACGAAACGAATCCTTTAGGGAAACAAGTCCATACAGAGGTGATTCCCATTGATGACGTGACGACAAGGCAAGCTTCATCCCGCAAATGGCTCGATCGCCATTCATTACCATTGGATATTGATCGTTCACTTTGTGCTGGCAACTATGGCAACCAAGATGTCGTTTCTTTCGAGTGCATCGAAAGACCCGTACCCCCCTCGACTCTTGAGGGCAACAATCTCCAAGTCCAAGCCTCGGACGATGAAACAGTAGACTTGACTGAGCCTTGGCTCGAGTCATTCTGCATTGTTCAGTTTCTCAATGTTTGGTGCCTCGGCCTCCTCCACACACACAGACTCTTTTCACTCTCTTTGAATAGACCGATCGATCCTGGGAAATTTGTGGCGGAACCTTCAAACTTATCGACGGACGGAGTCATTGGCGTTCTGAATGGCCAAAAAAGCGACACCAGCTACGACTACCTATTCTCCTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGGAACACCAAGGTCATTGTTTCTGTATTCGGCCCTAGAGAAAGTAAGAAAGCAATGATGTATAGTGATATTGGCCGGCTCAATTGTAGCGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGAGTTCTCCTCAATGCTACATAAAGCTTTGGAAGGGGCAATAATATTCGAGACATTCCCCAAGACCACTGTGGATGTATTTGCCTTAGTGTTGGAATCTGGAGGCAGCGATCTTCCTGTTGTAATATCATGTGCTAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGTAAGAATCTTCTTATTGATCCTGCATTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACAGGCGAATGGTCAACCGCTAAAATTAATGAGGGTATGCAGCTTTGTCTTGATGCTTCGTGTAAGCTTGTGACGATCATGCGGTCATGCTTGAAGGAATCTGCCGCCACGGTTTCAGAGGAATAA 2760 43.88 MSEDTMKREVATTIISLISFILMQQAFCADTYDTSTPGNWTCRCFSPYQENQKLTLGANCSTSCSCTQDVGVIGMWTCICVTDGFPKVAANPRDSDCFTSCNCSSGLPPESPSFKRHISSNVVVIILSLCVIIITLAFFILVVCYLCRRDKCRAQTPIFSLEKLMSYNSLTNLISHKSSSPPDSKVMMGSPVNNIKGCFFMNQCLLRTKSRSLCGIIIQFSYSELENATNKFSSSHLVGRGGSSFVYRGELKDSRTVAVKRLNIQGGPDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDAASGEKMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSASKGEESLAIWAAPRLQNSRRVITELPDPHLDGLFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNIAPDKSRRNNISANVFQGRLSACCEESVRDSVRDETNPLGKQVHTEVIPIDDVTTRQASSRKWLDRHSLPLDIDRSLCAGNYGNQDVVSFECIERPVPPSTLEGNNLQVQASDDETVDLTEPWLESFCIVQFLNVWCLGLLHTHRLFSLSLNRPIDPGKFVAEPSNLSTDGVIGVLNGQKSDTSYDYLFSCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIIFETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2565634 2576037 - CmoCh20G005300.1 Cmo20g00530 404847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00530 919 SUPERFAMILY Ribosomal protein S5 domain 2-like 704 859 IPR020568 -
Cmo20g00530 919 Gene3D Transferase(Phosphotransferase) domain 1 313 536 - -
Cmo20g00530 919 SUPERFAMILY Ribonuclease PH domain 2-like 830 917 IPR036345 -
Cmo20g00530 919 PANTHER OS01G0750732 PROTEIN 6 618 - -
Cmo20g00530 919 ProSiteProfiles Protein kinase domain profile. 232 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00530 919 Gene3D Phosphorylase Kinase; domain 1 206 312 - -
Cmo20g00530 919 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE NCRK ISOFORM X1 6 618 - -
Cmo20g00530 919 Pfam Protein kinase domain 234 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00530 919 ProSitePatterns Protein kinases ATP-binding region signature. 238 260 IPR017441 GO:0005524
Cmo20g00530 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Cmo20g00530 919 Pfam 3' exoribonuclease family, domain 1 705 828 IPR001247 -
Cmo20g00530 919 SMART serkin_6 232 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00530 919 SUPERFAMILY Protein kinase-like (PK-like) 215 512 IPR011009 -
Cmo20g00530 919 CDD STKc_IRAK 238 515 - -
Cmo20g00530 919 CDD RNase_PH_MTR3 705 911 - -
Cmo20g00530 919 Pfam 3' exoribonuclease family, domain 2 832 893 IPR015847 -
Cmo20g00530 919 Gene3D - 703 917 IPR027408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00289 Cmo-Chr4:1450313 Cmo20g00530 Cmo-Chr20:2565634 5.55E-22 dispersed
Cmo12g00208 Cmo-Chr12:1370979 Cmo20g00530 Cmo-Chr20:2565634 9.41E-09 dispersed
Cmo20g00530 Cmo-Chr20:2565634 Cmo15g00209 Cmo-Chr15:1017698 2.64E-69 dispersed
Cmo20g00530 Cmo-Chr20:2565634 Cmo02g00904 Cmo-Chr2:5575654 1.43E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75158 PF00069 Pkinase 7.40E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00530 - - cpep:111777490 1267.29