Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00532 ATGGAACCCACCGGCTGCACCAATGGCCACGTTTCAGTGGATGGGCTTTGCCTGAAGGATCCATTGTACTGGGGGGCAGCAGCGGAGGGGCTCAAAGGTAGCCATGTAGACGAGGTGAAGAGAATGGTGGAGGAGTACCGACGGGCCGTGGTCCGGCTCGGTGGAGAGAGCCTGACAATTGGGCAGGTGGCGGCAGTTGCCTTGCACGACGGCGGAGTGCGAGTGGAACTGAACGAATCGGCGAGAGAAGGAGTTAAGGCTAGCAGTGATTGGGTGATGGACAGTATGAAGAAAGGAACTGATAGCTACGGCGTCACTACTGGGTTCGGTGCTACCTCTCACCGTAGGACCAACCAAGGCGCTGCCTTGCAGAAGGAACTTATTAGGTTTTTGAATGCCGGAATATTCGGGAATGGAACGGAGACGAGCCACACGCTGCCGCACACGGCCACAAGAGCCGCCATGTTGGTCAGAATCAACACCCTTCTCCAAGGCTATTCCGGCATCAGATTTGAGATTTTGGAGTCTATAACGAAGCTTCTCAACCACAACGTGACACCTTGTCTTCCTCTGCGAGGCACCATCACGGCGTCCGGTGATTTGGTACCCTTTTCCTACATCGCTGGTCTCTTGACTGGCCGACCCAATGCCAAGGCTGTCGGCCCAGCCGGTCAGGTGGTTGACGCTGGAGCAGCCTTTAAACTCGCCGGCATCGGCGGTGGATTCTTCGAGTTGCAGCCTAAGGAGGGTCTTGCACTTGTGAATGGCACGGGCGTTGGGTCTGGTTTAGCGGCTATTGTTCTGTTCGAAGCCAATTTATTGGCTCTTTTGTCTGAAGTGATATCAGCCATTTTTGCTGAAGTAATGCAGGGGAAGCCAGAGTTCACCGACCATTTAACTCATAAATTGAAGCACCATCCAGGCCAAATCGAGGCAGCTGCCATTATGGAGCACATTTTGGAAGGGAGTGCTTTCGTTAAAGACGCTAAGAAATTACACGAACTAGACCCACTTCAAAAGCCAAAACAAGACCGTTATGCTCTACGAACATCACCTCAATGGTTAGGCCCTCAAATCGAAGTGATTCGACATTCGACGAAATCGATCGAGAGAGAGATCAACTCGGTGAACGACAATCCATTGATCGATGTTTCGAGGAACAAAGCTATACATGGAGGCAATTTTCAAGGAACTCCAATTGGAGTATCCATGGACAATACTAGATTAGCTCTTGCCTCAATTGGGAAGCTTTTGTTTGCTCAATTCTCGGAGCTTGTGAATGATTTCTACAACAATGGGTTACCTTCAAATCTCTCAGGAGGAAGTAATCCAAGCTTGGATTATGGATTCAAAGGAGCTGAAATCGCCATGGCTTCCTACTGCTCGGAGCTACAATTCTTGGCGAATCCTGTCACCAATCATGTTCAAAGCGCAGAGCAACACAATCAAGATGTAAACTCATTAGGACTAATCTCTTCGAGAAAAACAGCTGAGGCCATAGATATCTTGAAGCTAATGAGCACGACATTCCTAGTGGCACTCTGCCAAGCCATAGATTTGAGACACATAGAGGAGAATCTGAAGAACACAGTGAAGAACACAGTGAGTCAAGTGGCTAAGAAGGTATTAACCATTGGTGTAAACGGAGAGCTTCTTCCTTCACGATTCTGCGAGAAGGATTTGCTCAAAGTCATCGACAGAGAACATGTTTATGCTTACATTGACGACCCCTGCAGCATGACATATCCATTAATGCAGAAGCTAAGGCAAGTTTTTGTAGAACATGCATTGAACAACGATGATGATCTGAAGAACACAAACGCTTCAATCTTCTTAAAGATTGGAGCTTTCGAGGAGGAACTGAAAACCCATTTGCCTAAAGAAGTAGAAAGTGGAAGATTAGCCATTGCTAAAGGGAAAGCGACGATTCCTAACAAGATCAAGGATTGTAGATCATACCCACTTTATAGATTTGTCAGAGAAGAACTGGGAACGGCGCTGTTGACAGGGGAAAAGGTTAGGTCACCAGGGGAAGAATTTGACAAGGTTTTTACTGCAATTTGTGAGGGGAAGATCATTGATCCTCTGCTTGAATGCCTTGAGCGTTGGGATGGGACTCCTCTTCCTGTAAATTAA 2136 47.8 MEPTGCTNGHVSVDGLCLKDPLYWGAAAEGLKGSHVDEVKRMVEEYRRAVVRLGGESLTIGQVAAVALHDGGVRVELNESAREGVKASSDWVMDSMKKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTETSHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNHNVTPCLPLRGTITASGDLVPFSYIAGLLTGRPNAKAVGPAGQVVDAGAAFKLAGIGGGFFELQPKEGLALVNGTGVGSGLAAIVLFEANLLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSAFVKDAKKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLKNTVKNTVSQVAKKVLTIGVNGELLPSRFCEKDLLKVIDREHVYAYIDDPCSMTYPLMQKLRQVFVEHALNNDDDLKNTNASIFLKIGAFEEELKTHLPKEVESGRLAIAKGKATIPNKIKDCRSYPLYRFVREELGTALLTGEKVRSPGEEFDKVFTAICEGKIIDPLLECLERWDGTPLPVN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2588734 2591738 + CmoCh20G005320.1 Cmo20g00532 404849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00532 711 PANTHER AMMONIA-LYASE, PUTATIVE-RELATED 8 711 - -
Cmo20g00532 711 Gene3D - 524 645 IPR023144 -
Cmo20g00532 711 PANTHER HISTIDINE AMMONIA-LYASE 8 711 IPR001106 -
Cmo20g00532 711 Pfam Aromatic amino acid lyase 58 533 IPR001106 -
Cmo20g00532 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 20 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo20g00532 711 Gene3D Fumarase/aspartase (Central domain) 259 705 - -
Cmo20g00532 711 CDD PAL-HAL 56 521 IPR001106 -
Cmo20g00532 711 Gene3D - 12 257 IPR024083 -
Cmo20g00532 711 SUPERFAMILY L-aspartase-like 20 710 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00532 Cmo-Chr20:2588734 Cmo07g00949 Cmo-Chr7:4565416 0 dispersed
Cmo20g00532 Cmo-Chr20:2588734 Cmo03g01227 Cmo-Chr3:9485339 0 wgd
Cmo20g00532 Cmo-Chr20:2588734 Cmo07g00948 Cmo-Chr7:4557877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00532 K10775 - csv:101218156 1319.68