Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00553 ATGCTTTCTCTGCGTTCATGCTACTGTTTACGCCCCATTACATTGCCTCATCCCCAATTCAAGAAACTCATCTTCTCCAACAAACCTCCCCCTTTCAAACCCATTTTTCAGAATTTTGTTTCAGCAATGTCTTCTCGTCCTTCTGCTTTCGATGCTCTCATGTCCGGTGCTCGGGCCGCTGCCAAGAAGAAGCCTGTAAATTCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCTTTAGGCCCTCCTCCGAAACCTAACTCTTCCCTGGCTTTGGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGTAGTTCAACCTCAACTTTGGATAATCATGGAGATCCTAATCCGGTTAAGTCCGAGGAAGCTGTAGATTTGGGGGAAACCAAGTTGCGTCAGGATGATGGTGGGAATTTTGGAGGCAAGATTGGGCCGGTTGCGAATAAGAAGTGCGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATCCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAAACATTTGCATGTTGGAATGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGGTTTGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATCGTCTGCAACATGTTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCCGCGCACGAAGGGCTCGAGTTGGGTATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCCAAAGCGAGCCGTTCGTCACAATCCATGATGCGAAAGCCTGATGCTTTAACTATTACCAAAGTATTTGACTCATTTCGGCTGATCGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGCGAACCTTTGTATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGGCAAGCAGCTGTATATGCTGAAAAACATTCAACACCCCCAGCGAACGTTCAATCTCCTCTAGAAGAGGGTGCTAAGATTGTAAAGCAGGTGTATTCTGTGCTCCCTGTTTATGATAAACTTGTCCCTGCGCTTCTTAATGGTGGTGTGTGGAACCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCTATGTTGGCAAAACCAACAAAGGGAGTCTCCGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATTCATTACATGGAAGATGGTTCAGTTGAGATCTACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCTGTAAGATCGTTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAGAAGATTTTGCCTTTTCAGATTCTGAGTACACGAGCTCGCAAGAACGTGGCCGTGAGCGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTGTATCTCGATGGTCAACCACTTATTCATAAAGAACTTAGCGTTCGTCGAGAGCATCTCTATGATTCATTTATTGAAGAAGCTGGATATTTTCAATTTGCCACAGCAATAACAACAAGCGATCTTGAGGAAATACAAAAATTCCTTGATGCATCTGTTGATCAAAGTTGTGAGGGTTTAATCATCAAAACATTGAACCGGGATGCTACTTACGAGCCTTCCAAGAGGTCACTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGCATTTGTAAGATTGGAACTGGTTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCAGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAACCTACTGAGGTTTGGGAGGTTAAAGCGGCAGACTTGACTATCAGCCCAGTTCATCGTGCAGGAGTCGGCATCGTGGATTCCAACAAGGGAATTTCTCTTCGGTTTCCACGTCTTGTTCGTGTAAGGAAAGACAAAACTCCAGAGGAGGCCACATTGTCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACTCAACCACCAAAACAATCAAGATGACAATGATGAAGACTGA 2415 43.69 MLSLRSCYCLRPITLPHPQFKKLIFSNKPPPFKPIFQNFVSAMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLGPPPKPNSSLALESTPPVESQCGSSTSTLDNHGDPNPVKSEEAVDLGETKLRQDDGGNFGGKIGPVANKKCASSVQERTAKLKSSIPELKKKAKDFNSKTFACWNEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDSFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPANVQSPLEEGAKIVKQVYSVLPVYDKLVPALLNGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIHKELSVRREHLYDSFIEEAGYFQFATAITTSDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSNKGISLRFPRLVRVRKDKTPEEATLSEQVADMYNAQKLNHQNNQDDNDED 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2673085 2679125 - CmoCh20G005530.1 Cmo20g00553 404870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00553 804 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 456 464 IPR016059 GO:0003909
Cmo20g00553 804 ProSiteProfiles ATP-dependent DNA ligase family profile. 538 674 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cmo20g00553 804 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 424 642 - -
Cmo20g00553 804 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 248 787 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cmo20g00553 804 Gene3D - 167 434 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cmo20g00553 804 Gene3D - 641 803 IPR012340 -
Cmo20g00553 804 PANTHER DNA LIGASE 1 127 804 - -
Cmo20g00553 804 MobiDBLite consensus disorder prediction 60 121 - -
Cmo20g00553 804 CDD OBF_DNA_ligase_I 644 789 - -
Cmo20g00553 804 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 172 423 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cmo20g00553 804 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 127 804 - -
Cmo20g00553 804 MobiDBLite consensus disorder prediction 90 113 - -
Cmo20g00553 804 Gene3D - 442 640 - -
Cmo20g00553 804 CDD Adenylation_DNA_ligase_I_Euk 421 639 - -
Cmo20g00553 804 ProSitePatterns ATP-dependent DNA ligase signature 2. 610 636 IPR016059 GO:0003909
Cmo20g00553 804 SUPERFAMILY Nucleic acid-binding proteins 644 790 IPR012340 -
Cmo20g00553 804 Pfam DNA ligase N terminus 190 365 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cmo20g00553 804 Pfam ATP dependent DNA ligase domain 432 636 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cmo20g00553 804 Pfam ATP dependent DNA ligase C terminal region 661 772 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cmo20g00553 804 Gene3D DNA ligase/mRNA capping enzyme 461 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00755 Cmo-Chr5:4015660 Cmo20g00553 Cmo-Chr20:2673085 1.01E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00553 K10747 - csv:101213447 1423.68