Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cmo20g00563	ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTCACGAGTATAGGCATGTGGTGCTCCCACCCGACGTGGCAAAGTTGCTGCCTAAGAATCGCCTGCTCTCTGAAAATGAGTGGCGTGCACTTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGTCCCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCCAAATGA	270	51.48	MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK	89

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
20	2710788	2712098	-	CmoCh20G005630.1	Cmo20g00563	404880

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cmo20g00563	89	Pfam	Cyclin-dependent kinase regulatory subunit	4	70	IPR000789	GO:0016538
	Cmo20g00563	89	SUPERFAMILY	Cell cycle regulatory proteins	1	83	IPR036858	GO:0016538
	Cmo20g00563	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	3	17	IPR000789	GO:0016538
	Cmo20g00563	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	18	32	IPR000789	GO:0016538
	Cmo20g00563	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	40	54	IPR000789	GO:0016538
	Cmo20g00563	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	55	69	IPR000789	GO:0016538
	Cmo20g00563	89	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	1	86	-	-
	Cmo20g00563	89	Gene3D	-	1	83	IPR036858	GO:0016538
	Cmo20g00563	89	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	1	86	-	-
	Cmo20g00563	89	SMART	CKS_2	3	72	IPR000789	GO:0016538

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cmo13g00270	Cmo20g00563	CCT
	Cmo02g01407	Cmo20g00563	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cmo13g00270	Cmo-Chr13:2208870	Cmo20g00563	Cmo-Chr20:2710788	1.82E-50	dispersed
	Cmo02g01407	Cmo-Chr2:8350376	Cmo20g00563	Cmo-Chr20:2710788	3.20E-61	wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cmo20g00563	K02219		-	egr:104421234	167.548