Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00582 ATGGGGAGCTGTTTGTCTAGTGGCAATCAGAGTAGTTGTAATGGTGGAAGCAATGGAGAGGGAGTTTTTGAATCCTGTTTGGGGAATGGAGTTTGTGGTCGGATTGAAAGAAACAGAACATTCTCAGATCATGTTTTCTCTTTGCAGCATTTGAATTCTGTACCTAATAGACTTGTTTATAATGGGAAGACTTCGAATTCTTGCATTTTCACTCAACAAGGTCGAAAGGGTATTAACCAGGACGCCATGGTTGTATGGGAAGACTTCATATCAGATGGTGCGATTTTCTGTGGCGTGTTTGATGGTCATGGTCCACACGGTCACGTAGTTGCACGAAAGGTTAGAGATGTTCTGCCGAGGAAGCTTGTGTCATTCTGGCAGTCGTCTCAGTTGAAGCGTGATAGATCGGATAGAACTTCTTGTCTTGCGTGGAGTCGAAAGAATTCAGCAGATGGTGAAGGACAGGACATAGATGGCTCACAGGAGGACAGATCAAGTTCTTTATGGAGAAGAACTTTCCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAATCTGATCCCAAATTGGATTGTTTCTGTAGTGGCTGTACTGCCATCACTCTAGTGAAGCAGGGCTCGGATCTATTCGTGGGAAGTATTGGGGATTCTCGAGCGATTCTTGGATCGAAAGACAGCAGTGATTCTCTTGTAGCAACACAATTGACAGTAGATCTAAAGCCCGATCTGCCCAGAGAGGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTGTTTGCATTGCATGATGAACCAGAAGTGCCAAGAGTGTGGCTGCCATTTGACAACGCTCCGGGATTAGCCATGGCTCGAGCATTTGGCGACTTCTGTTTGAAGGACTATGGAGTTATCTCTATTCCCGAGTTCTCACACCGTGCGCTTACAGATAATGATCTGTTTGTTGTTCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAACGACGAGGTGGTTGAGATAGTTTATTCTGCCTCGACTCGGTCATCGGCAGCTCGAATGGTGGTAGACTCGGCTGCTCGGGAGTGGAAGCTCAAGTACCCTACTTCGAAAATGGACGACTGTGCAGTCGTTTGCCTGTTCTTGGATGGGAAAATGGATTCAGAGTCAGAAAATGAAGAACAAGCTTCTTGTGCAACTCTTGAATCCAATCAAATGAGTAACACAGAATGTTCAGATGAAGAGCAGAGGTCTGGTGAGCCGAGTTTGCAAAGGAATTATACGGTTCGATCGTCGGAAGAAAAGGACCGAATTGGGGGATTATATTCACATAGTGAAGAGAATGAAGAATCAATGTCTGCGGAAGATGAGAGTTGGCTAGGACTGGAGGGTGTAACAAGAGTAAACTCTTTGGTTCAACTTCCTAGATTTTCTTGA 1410 44.96 MGSCLSSGNQSSCNGGSNGEGVFESCLGNGVCGRIERNRTFSDHVFSLQHLNSVPNRLVYNGKTSNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGVFDGHGPHGHVVARKVRDVLPRKLVSFWQSSQLKRDRSDRTSCLAWSRKNSADGEGQDIDGSQEDRSSSLWRRTFLKSYKAMDKELKSDPKLDCFCSGCTAITLVKQGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALHDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRALTDNDLFVVLASDGVWDVLSNDEVVEIVYSASTRSSAARMVVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESENEEQASCATLESNQMSNTECSDEEQRSGEPSLQRNYTVRSSEEKDRIGGLYSHSEENEESMSAEDESWLGLEGVTRVNSLVQLPRFS 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2863747 2866771 + CmoCh20G005820.1 Cmo20g00582 404899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00582 469 SMART PP2C_4 55 371 IPR001932 -
Cmo20g00582 469 CDD PP2Cc 72 373 IPR001932 -
Cmo20g00582 469 MobiDBLite consensus disorder prediction 420 435 - -
Cmo20g00582 469 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 461 - -
Cmo20g00582 469 MobiDBLite consensus disorder prediction 384 449 - -
Cmo20g00582 469 Pfam Protein phosphatase 2C 160 350 IPR001932 -
Cmo20g00582 469 PANTHER ALPHABET, ISOFORM E-RELATED 1 461 - -
Cmo20g00582 469 Gene3D - 54 375 IPR036457 -
Cmo20g00582 469 MobiDBLite consensus disorder prediction 384 403 - -
Cmo20g00582 469 ProSiteProfiles PPM-type phosphatase domain profile. 66 373 IPR001932 -
Cmo20g00582 469 SUPERFAMILY PP2C-like 59 375 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01944 Cmo-Chr11:13426857 Cmo20g00582 Cmo-Chr20:2863747 0 dispersed
Cmo16g01053 Cmo-Chr16:7378460 Cmo20g00582 Cmo-Chr20:2863747 1.56E-143 dispersed
Cmo17g00575 Cmo-Chr17:5906993 Cmo20g00582 Cmo-Chr20:2863747 1.02E-133 dispersed
Cmo19g01011 Cmo-Chr19:8942372 Cmo20g00582 Cmo-Chr20:2863747 0 wgd
Cmo02g00117 Cmo-Chr2:615738 Cmo20g00582 Cmo-Chr20:2863747 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00582 - - cmax:111469610 786.563