Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00597 ATGGTAGGTGGGAATCTCAAGATATGGGATTCCAGCAGAACTTCGTTATGGTCCGCCCTCCAGTTCCCTTCTAATTCTAGTTACACAACAATGGAGCTGATGGATTCTGGGAATTTAGTTCTCAAGGAATTAGGCGTCAATGGCACAACTCTGTGGCAAAGCTTCCAAAATCCAACCGATACATTTCTTCCGGGCATGAACATGACCGGCGACTTGAAGTTGACTTCTTGGAAAGCTTCAGACGACCCCTCGCCTGGGAGTTTCAGGTTTCTCAAGGATACGGGTGGCCGGTTCATTATCGAGAAACATGGTTCGCAGTATTGGGTCAGCAAGGAACTATGGCAAAATTTCTCAACCGAGACTGATGGAATGATTGTGGACGTAATAGAGTTTCTGTCACTAAATACTGTCGGTGGCTGGAAGGACACCGACTATACAAGAGCAGTTATGGATTTCAGTGGGAATGTACAGTACCTTGCTAGAAACAGAACGACTGGGGAATGGGACGTCATCTGGTCGGAGCCGAGAAACAAATGTAATGTCGTATCAGCTTGTGGGACCTTCGCTAGCTGTCGGAGTGACACTAAACATACTTGCAGGTGCTTGCCTGGGTTTGAGCCCGCGTCCAAGGATGAATGGGGGTCTGGTGATTACTCGCATGGGTGCAAGAGAAAGTCAGAAATTTGCATCAAGGAAGTGGTTGAAGCTCGAGAGTTTTTTAAATTAAATATGAAGATGAAAAGGACGTCGAATATTGTGAAAGTAAATGGTGATGGGGAATGCAAAAGTAAGTGCCTTGAATCTTGTACATGTAAGGCGTATGCTGAAATAGGAATCAGCAGAACCAATATTTTGTGCGCCATTTGGGAAGATGACCTCCAAAGCATTTGGGAATATGCAGATGATGGTGGTGACGTTTACGTCCGTATCAAACGTTCTGACATTGAGTATATAACGGCACTCGACTGTGAAACATGTGGAAGCAGTATCGTCCCTTATCCTCTGAGCACAGGTCCCAACTGCGGTGATCCTATGTATGGTCGCTTCGATTGTTTACTTACTTACAGCATGTTCTACTTCCAGGCAGAAGATGATTCTTACGAGGTCACCAACATCGATCCACAATCAAATATTTTTACCATTGCAACAAACGGGTCTATCTGTAGAGGTAATGATAAACATGCAATTCAAAAGCTACTGAAATTAGAAAACTCGTCTACATTCAATGTAAAAAGTGGCTGTGACTCTGAATTCCATGAAATTGATATTCAATGGGAGAAACCATTAGAGCCAATCTGCAATGCACAAAAGGATTGCACCAATTGGCAGAATTCATTATGCAACTCATCAACAGACGCAAAAACAGGTGCTTGTGCAATTCTTCTTTTAACTGGACTGGTACCGGCTGCCGTGATCTTCCAGCCAGATCCAATGAAGAGAAATATCAGAGTTGGTATCATCGTCCCAGAGACCATTGCTGGGTTGATTGTTATTTCTTACTTGGTGTTGTATATTTACAATAAAAGAGGGAAGGTAGAAAACACAAAAGAGGAGCAAACAACAAGTCTTGGGGGACATCTGGTAATGACCCACTTGTACGAAAGTGAGATGCGTATCAGAGACTTCATGGGTTCCGGGATGTTTGGAGAAGATGATAGAAAAGCCATAGAAGTACCCGTTTTCGATTTGGAAACCATACTCAATGCTACAGACAACTTCTCTGAAGCAAACAAAATTGGACGAGGAGGATTTGGGACAGTTTACAAGGGACTTTTTCCAGGAGGACTGGAAATTGCAATAAAAAGACTGTCCCAAGGTTCCGCTCAAGGCTTAGATGAGTTTAAGAATGAAGCGATTCTCATCGCAAAACTTCAGCATCGAAACCTCGTTAGACTTTTGGGCTATTGTGTTGCAGGAGATGAAAAAATTTTGCTTCCAAACTCCTTCTCTTTGGTAGATCGAACCCTATGTTTGCTGGTGAATTGGGAGATGCGGTTTAATATCATCATTGGCATTGCTCGAGGACTAGTTTATTTGCATGAAGATTCAAGGTTGAGGATTATTCACAGACATATGAAAACAAGCAATGTTCTGTTGGACGCAGAAATGAATCCTAAAATCTCAGACTTTGGTTTGGCAAGAATCTTTGATGGCAAGCAAACAGAGGCATTCACCAAGAGAGTTGTTGGAACTTACGGCTATATGTCCCCAGAATATGCGATGGATGGATCATTCTCAGTGAAATCAGACGTGTTCAGTTTTGGTATAGTTGTGCTGGAGATTGTTAGTGGGATAAGGAACACAGGGTTCTACCAGTCGAAAGAAGCACTGAATCTTCTTGGATATGTATGGAGGTTGTGGAGAGGAAAGAGAGCAACGGAAATAGCAGAGGTAGCCATGCGAGAAAGCTACAATCCAAGTGAAGTTGTTAAATGTGTGGCTGTGGGATTGCTGTGTGTACAAGAAGACCCCAACGATCGCCCCACCATGTCAAATGTGGCCTTTATGCTCAGCTCCGGCAGTGATCCTGCTTCTCTTCCAATTCCTAAACAGCCAGCTTTCCTTGATAAGAGATCAACTCCTACTTCTTCTACAACAATCTCTTTGGAGTTTATGCAAGAAAATGTATACGGTGGCTATGCGAATAATTTCAATATATTAAGAGACAGTAATGAAGATTCTCAAGTCTCTGATGGAGGAAGATTTGAACTTGGATTCTTCACTCCAGAGGGAGCCTCAGAAGCCACAAGATACGTTGGTATCTGGTTTCATAATTCCAAACCGCGGATCGTTGTGTGGGTTGCCAACAGAGACCAACCACTGTCCGACAAGAATGGAGTTTTTGCTATCAAAGATGGCAATCTCAAGGTATTGGCATCAAACGGCACTTCTTTATGGTCCACCGCCCTCGATTACTCTCCTAATTCAACAATGGAGCTGATGGCTTCTGGGAATTTAGTTCTCAAGGAATTAGGCGTCAACAGCACAACTCTGTGGCAAAGCTTCCAAAATCCAACCGATACGTTTCTTCCGGGCATGAACATGACCGACGACTTGAAGTTGACTTCTTGGAAAGCTTCAGACGACCCCTCGCCTGGGAATTTTACGTTTCTCAAGGATATAGAAGGCCGCTTCGTCATCGAGAAAAGTGGTTCGCAGTATTGGGTCGGCAAGGAACTATGGCAAAATTTCTCAACCGAGACTGATGGAAATATTGCTGAAGCCATGGACTTATTGTCAAAGATTAGTGTCAGTGATTTGAAGGCCACCAACTACACCGTTCGTTTTCAAAATCAAGACTTGGATTACAACTACACAAGAGCAGTTATGGATTTCAGTGGGCAGGTACAGTTCCTTGCTAGAAATAGAGCGAGTGGGCAGTGGGATGTCATCTGGTCGGAACCGGAAAACATATGTAGTGTGGTATCAGCTTGTGGGACCTTCGCTAGCTGTCGGAGTGACACTAAACATACTTGCAGGTGCTTGCCTGGGTTTGAGCCAACGTCCAAGGATGAATGGGATTCTGATGATTACTCACATGGGTGCAAGAGAAAATCAGAAATTTGCATCAAAGAAGTGGTTGAAGCTGGAGAGTTTTTGAAATTAAATATGAAGGTGAAAAGAACGTCTAATATTGTGAAAGTAAATTTTGGGGAATGCGAAAGGAAGTGCCTTGAATCTTGTACATGTGAGGCGTATGCTGAAATAGAAGACAGCAGAGCCGAATTTGTGTGCATCATTTGGGAGGATGACCTCGAAAACACTTGGGAATATGCAGATGGTGGTGGCGACGTTCACATTCGTATCAAACGTTCTGACATTGAGCTCGATTGTGAACCATGTGGCAGCAACATCGTGCCTTATCCTTTGAGTCTGAGAACAGAATTCGACTGCGGTGTTCCTCTATATCGTAACTTTAGCTGCAACACTTCTGCTGGTCAGGTCCTCTTTCACACGGCACATGATGACTACAACGTCACCAACATGAACCCACAACTAAGAACTTTTACCATTGCAACAAACGGGTCTATCTGCAGAGGAAATGATATAGATGCAATTCAAAAGCTTCTGAAACTGGATCGCTCGTCTACATTCAAAGTAAGCAGCGGCTGTGACTCTAAATTCAATGAAATTGATATTCAATGGGAGAAACCACTAGAACCAATCTGCAATTCGCCAAGAGGTTGCACCAAATGGCTGAATTCAACATGCAAATCAACAACTGATGGAACAAATACAAATAGATGCTTGTGCAATCCTCCTTTAGAGTGGACTGGCATGGGATGCCTTAAACCAACAGAGAATGGTTTGAATCAGCCACGTGGAAAGCAGAGAAATATCAGAGTTGGCATCATTGTCCCAGTGACTATTGCTGGGTTGATTATTCTTTCCTGCTTGGTTCTGTATATTTACTACAAAAGAAGGAAGGAAGCTACTCACCTGTACGAAAGTGAGAAGCGTATCAGAGACTTCATGGGTTCCGGGATGTTTGGAGAAGATGATAGAAAGGCCATAGAAGTACCCATTTTTTATTTGGACACCATACTCAATGCTACAGACAACTTCTCTGAAGCAAACAAAATTGGACAAGGAGGATTTGGGACAGTTTACAAGGGACTTTTCCCAGGAGGACTGGAAGTTGCAATAAAGAGACTGTCGCAGGGTTCAGCTCAAGGCATGGATGAGTTCAAGAATGAGGCGATTCTCATCGCAAAACTTCAGCATCGAAATCTCGTCCGACTTTTAGGCTATTATCGAACGCAATGTTTATTGGTGAACTGGGAGATGCGTTTTAATATCATCATGGGCATTGCTCGAGGACTAGTTTATTTGCATGAAGATTCAAGGTTGAGAATTATCCACAGAGATATGAAAACAAGCAATATTCTGTTGGATGCAGAAATGAATCCTAAAATCTCAGACTTTGGTTTAGCAAGAATCTTTGATGGCAATCAAATAGAGGGAATCACCAACAGAGTTGTTGGAACCTTCGGGTACATGCCACCAGAATATGCATTGGATGGATCATTCTCAGTGAAATCAGACGTGTTCAGTTTTGGTATAGTTGTGTTGGAGATTGTTAGTGGGAGAAAGAACACAGGGTTCTACCAGTCCAAAGAAGCACTGAACCTTCTTGGATATGTATGGAAGTTGTGGAGAGAACACAGAGCAATGGAGATCGTCGCCTCGACGGTGCGAGAAAGGTGCAGTCCAAGTGAAGCTGTTAAATGTGTGGCTGTGGGGTTGCTGTGTGTGCAAGAAGACCCTAAGGACCGCCCCACCATGTCAAATGCAGTGTTTATGCTGAGCTCTGGCAGTGATCCTGCTTCTCTTCCAAATCCTAAGCAGCCGGCTTTCCTTGATAAGAGGTCCACTCCTTCTACTTCTTATGCCACCTCTTCGTCTGAGTTTAACCAAGAAATTCAGAAAAGTGAGAGCGGCAAGTAA 5448 43.43 MVGGNLKIWDSSRTSLWSALQFPSNSSYTTMELMDSGNLVLKELGVNGTTLWQSFQNPTDTFLPGMNMTGDLKLTSWKASDDPSPGSFRFLKDTGGRFIIEKHGSQYWVSKELWQNFSTETDGMIVDVIEFLSLNTVGGWKDTDYTRAVMDFSGNVQYLARNRTTGEWDVIWSEPRNKCNVVSACGTFASCRSDTKHTCRCLPGFEPASKDEWGSGDYSHGCKRKSEICIKEVVEAREFFKLNMKMKRTSNIVKVNGDGECKSKCLESCTCKAYAEIGISRTNILCAIWEDDLQSIWEYADDGGDVYVRIKRSDIEYITALDCETCGSSIVPYPLSTGPNCGDPMYGRFDCLLTYSMFYFQAEDDSYEVTNIDPQSNIFTIATNGSICRGNDKHAIQKLLKLENSSTFNVKSGCDSEFHEIDIQWEKPLEPICNAQKDCTNWQNSLCNSSTDAKTGACAILLLTGLVPAAVIFQPDPMKRNIRVGIIVPETIAGLIVISYLVLYIYNKRGKVENTKEEQTTSLGGHLVMTHLYESEMRIRDFMGSGMFGEDDRKAIEVPVFDLETILNATDNFSEANKIGRGGFGTVYKGLFPGGLEIAIKRLSQGSAQGLDEFKNEAILIAKLQHRNLVRLLGYCVAGDEKILLPNSFSLVDRTLCLLVNWEMRFNIIIGIARGLVYLHEDSRLRIIHRHMKTSNVLLDAEMNPKISDFGLARIFDGKQTEAFTKRVVGTYGYMSPEYAMDGSFSVKSDVFSFGIVVLEIVSGIRNTGFYQSKEALNLLGYVWRLWRGKRATEIAEVAMRESYNPSEVVKCVAVGLLCVQEDPNDRPTMSNVAFMLSSGSDPASLPIPKQPAFLDKRSTPTSSTTISLEFMQENVYGGYANNFNILRDSNEDSQVSDGGRFELGFFTPEGASEATRYVGIWFHNSKPRIVVWVANRDQPLSDKNGVFAIKDGNLKVLASNGTSLWSTALDYSPNSTMELMASGNLVLKELGVNSTTLWQSFQNPTDTFLPGMNMTDDLKLTSWKASDDPSPGNFTFLKDIEGRFVIEKSGSQYWVGKELWQNFSTETDGNIAEAMDLLSKISVSDLKATNYTVRFQNQDLDYNYTRAVMDFSGQVQFLARNRASGQWDVIWSEPENICSVVSACGTFASCRSDTKHTCRCLPGFEPTSKDEWDSDDYSHGCKRKSEICIKEVVEAGEFLKLNMKVKRTSNIVKVNFGECERKCLESCTCEAYAEIEDSRAEFVCIIWEDDLENTWEYADGGGDVHIRIKRSDIELDCEPCGSNIVPYPLSLRTEFDCGVPLYRNFSCNTSAGQVLFHTAHDDYNVTNMNPQLRTFTIATNGSICRGNDIDAIQKLLKLDRSSTFKVSSGCDSKFNEIDIQWEKPLEPICNSPRGCTKWLNSTCKSTTDGTNTNRCLCNPPLEWTGMGCLKPTENGLNQPRGKQRNIRVGIIVPVTIAGLIILSCLVLYIYYKRRKEATHLYESEKRIRDFMGSGMFGEDDRKAIEVPIFYLDTILNATDNFSEANKIGQGGFGTVYKGLFPGGLEVAIKRLSQGSAQGMDEFKNEAILIAKLQHRNLVRLLGYYRTQCLLVNWEMRFNIIMGIARGLVYLHEDSRLRIIHRDMKTSNILLDAEMNPKISDFGLARIFDGNQIEGITNRVVGTFGYMPPEYALDGSFSVKSDVFSFGIVVLEIVSGRKNTGFYQSKEALNLLGYVWKLWREHRAMEIVASTVRERCSPSEAVKCVAVGLLCVQEDPKDRPTMSNAVFMLSSGSDPASLPNPKQPAFLDKRSTPSTSYATSSSEFNQEIQKSESGK 1815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2936558 2946151 + CmoCh20G005970.1 Cmo20g00597 404914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00597 1815 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Cmo20g00597 1815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1619 1631 IPR008271 GO:0004672|GO:0006468
Cmo20g00597 1815 ProSiteProfiles Protein kinase domain profile. 1522 1786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00597 1815 SUPERFAMILY Protein kinase-like (PK-like) 557 837 IPR011009 -
Cmo20g00597 1815 SUPERFAMILY Protein kinase-like (PK-like) 1506 1769 IPR011009 -
Cmo20g00597 1815 Gene3D Transferase(Phosphotransferase) domain 1 1588 1776 - -
Cmo20g00597 1815 ProSiteProfiles PAN/Apple domain profile. 1189 1272 IPR003609 -
Cmo20g00597 1815 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 884 1583 - -
Cmo20g00597 1815 Gene3D Phosphorylase Kinase; domain 1 1497 1587 - -
Cmo20g00597 1815 Gene3D Phosphorylase Kinase; domain 1 548 646 - -
Cmo20g00597 1815 ProSiteProfiles PAN/Apple domain profile. 229 311 IPR003609 -
Cmo20g00597 1815 CDD STKc_IRAK 579 837 - -
Cmo20g00597 1815 Pfam PAN-like domain 1199 1254 IPR003609 -
Cmo20g00597 1815 Pfam PAN-like domain 241 295 IPR003609 -
Cmo20g00597 1815 Pfam Protein kinase domain 1523 1588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00597 1815 Pfam Protein kinase domain 574 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00597 1815 Pfam Protein kinase domain 1593 1766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00597 1815 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1586 1809 - -
Cmo20g00597 1815 SMART ntp_6 235 310 IPR003609 -
Cmo20g00597 1815 SMART ntp_6 1194 1269 IPR003609 -
Cmo20g00597 1815 SMART serkin_6 1522 1768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00597 1815 SMART serkin_6 573 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00597 1815 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 884 1583 - -
Cmo20g00597 1815 MobiDBLite consensus disorder prediction 1772 1815 - -
Cmo20g00597 1815 Pfam D-mannose binding lectin 4 73 IPR001480 -
Cmo20g00597 1815 Pfam D-mannose binding lectin 931 1020 IPR001480 -
Cmo20g00597 1815 SMART blect_4 886 1005 IPR001480 -
Cmo20g00597 1815 Gene3D Transferase(Phosphotransferase) domain 1 654 845 - -
Cmo20g00597 1815 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 868 - -
Cmo20g00597 1815 SUPERFAMILY alpha-D-mannose-specific plant lectins 4 83 IPR036426 -
Cmo20g00597 1815 Gene3D - 888 1003 IPR036426 -
Cmo20g00597 1815 MobiDBLite consensus disorder prediction 1787 1815 - -
Cmo20g00597 1815 ProSitePatterns Protein kinases ATP-binding region signature. 1528 1550 IPR017441 GO:0005524
Cmo20g00597 1815 CDD PAN_AP_plant 238 310 - -
Cmo20g00597 1815 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1586 1809 - -
Cmo20g00597 1815 CDD B_lectin 896 1005 IPR001480 -
Cmo20g00597 1815 CDD PAN_AP_plant 1198 1269 - -
Cmo20g00597 1815 ProSiteProfiles Bulb-type lectin domain profile. 1 54 IPR001480 -
Cmo20g00597 1815 ProSiteProfiles Protein kinase domain profile. 573 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00597 1815 Pfam S-locus glycoprotein domain 141 208 IPR000858 GO:0048544
Cmo20g00597 1815 Pfam S-locus glycoprotein domain 1086 1168 IPR000858 GO:0048544
Cmo20g00597 1815 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 3 868 - -
Cmo20g00597 1815 SUPERFAMILY alpha-D-mannose-specific plant lectins 931 1030 IPR036426 -
Cmo20g00597 1815 Gene3D - 1 95 - -
Cmo20g00597 1815 ProSiteProfiles Bulb-type lectin domain profile. 881 1001 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00979 Cmo-Chr19:8813769 Cmo20g00597 Cmo-Chr20:2936558 0 dispersed
Cmo20g00597 Cmo-Chr20:2936558 Cmo18g00314 Cmo-Chr18:2010095 1.04E-24 dispersed
Cmo20g00596 Cmo-Chr20:2935475 Cmo20g00597 Cmo-Chr20:2936558 3.19E-08 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75160 PF00069 Pkinase 6.50E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00597 - - cpep:111777045 3409.77