Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00602 ATGCCTAAATTAGAAAAATTACAAACTAGAAGGCCTGGATCTTTATCCGTGGCAGAGACTCTTGCAAAATGGAAAGATTACAACGATCACCTCGACTCATGTACTGATGAGGCGAAACTCACTCGTAGAGTTCCAGCCAAGGGATCGAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAATGGGTTGCAGAAATTCGGGCACCAAAAAGGGGAAGTCGGCTGTGGTTAGGTACATTTCCAACTGCCATTGATGCGGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGGACTTCAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAAGAATCACCACCAACAAAGGAATCTCCTTCTCCTGAAATCAAGAGGTCTTCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTACGAGTCCACAATAACATCAGATCACTCTGAGGAAGGTGCAGCCGAAGATGTGTAG 546 44.87 MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCTDEAKLTRRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPKRGSRLWLGTFPTAIDAALAYDEAARAMYGTSARLNFPNISIPTLLKEKESPPTKESPSPEIKRSSISSLGSTSLSLSYESTITSDHSEEGAAEDV 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2956077 2956622 - CmoCh20G006020.1 Cmo20g00602 404919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00602 181 MobiDBLite consensus disorder prediction 132 159 - -
Cmo20g00602 181 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Cmo20g00602 181 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Cmo20g00602 181 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Cmo20g00602 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 167 - -
Cmo20g00602 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 167 - -
Cmo20g00602 181 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Cmo20g00602 181 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Cmo20g00602 181 MobiDBLite consensus disorder prediction 143 159 - -
Cmo20g00602 181 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Cmo20g00602 181 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Cmo20g00602 181 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00160 Cmo-Chr15:737528 Cmo20g00602 Cmo-Chr20:2956077 6.42E-46 dispersed
Cmo20g00602 Cmo-Chr20:2956077 Cmo04g03016 Cmo-Chr4:21184855 4.58E-42 dispersed
Cmo20g00602 Cmo-Chr20:2956077 Cmo03g00335 Cmo-Chr3:4461152 1.32E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11740 PF00847 AP2 6.80E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00602 - - csv:101207656 271.552