Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00602 | ATGCCTAAATTAGAAAAATTACAAACTAGAAGGCCTGGATCTTTATCCGTGGCAGAGACTCTTGCAAAATGGAAAGATTACAACGATCACCTCGACTCATGTACTGATGAGGCGAAACTCACTCGTAGAGTTCCAGCCAAGGGATCGAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAATGGGTTGCAGAAATTCGGGCACCAAAAAGGGGAAGTCGGCTGTGGTTAGGTACATTTCCAACTGCCATTGATGCGGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGGACTTCAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAAGAATCACCACCAACAAAGGAATCTCCTTCTCCTGAAATCAAGAGGTCTTCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTACGAGTCCACAATAACATCAGATCACTCTGAGGAAGGTGCAGCCGAAGATGTGTAG | 546 | 44.87 | MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCTDEAKLTRRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPKRGSRLWLGTFPTAIDAALAYDEAARAMYGTSARLNFPNISIPTLLKEKESPPTKESPSPEIKRSSISSLGSTSLSLSYESTITSDHSEEGAAEDV | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 2956077 | 2956622 | - | CmoCh20G006020.1 | Cmo20g00602 | 404919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00602 | 181 | MobiDBLite | consensus disorder prediction | 132 | 159 | - | - | |
Cmo20g00602 | 181 | SMART | rav1_2 | 66 | 129 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00602 | 181 | Pfam | AP2 domain | 65 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00602 | 181 | Gene3D | AP2/ERF domain | 66 | 125 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo20g00602 | 181 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 6 | 167 | - | - | |
Cmo20g00602 | 181 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 6 | 167 | - | - | |
Cmo20g00602 | 181 | ProSiteProfiles | AP2/ERF domain profile. | 66 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00602 | 181 | SUPERFAMILY | DNA-binding domain | 66 | 123 | IPR016177 | GO:0003677 | |
Cmo20g00602 | 181 | MobiDBLite | consensus disorder prediction | 143 | 159 | - | - | |
Cmo20g00602 | 181 | CDD | AP2 | 65 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00602 | 181 | PRINTS | Ethylene responsive element binding protein signature | 67 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo20g00602 | 181 | PRINTS | Ethylene responsive element binding protein signature | 89 | 105 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo15g00160 | Cmo-Chr15:737528 | Cmo20g00602 | Cmo-Chr20:2956077 | 6.42E-46 | dispersed | |
Cmo20g00602 | Cmo-Chr20:2956077 | Cmo04g03016 | Cmo-Chr4:21184855 | 4.58E-42 | dispersed | |
Cmo20g00602 | Cmo-Chr20:2956077 | Cmo03g00335 | Cmo-Chr3:4461152 | 1.32E-49 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11740 | PF00847 | AP2 | 6.80E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00602 | - | - | csv:101207656 | 271.552 |