Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00606 ATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCCGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTAATAAACACAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGGAAACGTCTAAAGGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTATCTGCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGTCATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGCTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGATATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTCGACACGTCTCAGGATCATGTTCTCCGCCCACCAGTTGCTTAA 723 46.2 MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2970707 2977931 + CmoCh20G006060.1 Cmo20g00606 404923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00606 240 Coils Coil 118 180 - -
Cmo20g00606 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Cmo20g00606 240 Pfam Helix-loop-helix DNA-binding domain 80 129 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00151 Cmo20g00606 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00202 Cmo-Chr10:905295 Cmo20g00606 Cmo-Chr20:2970707 1.59E-15 dispersed
Cmo16g00916 Cmo-Chr16:5522341 Cmo20g00606 Cmo-Chr20:2970707 2.71E-98 dispersed
Cmo18g00301 Cmo-Chr18:1954504 Cmo20g00606 Cmo-Chr20:2970707 1.54E-35 dispersed
Cmo02g00151 Cmo-Chr2:740367 Cmo20g00606 Cmo-Chr20:2970707 2.87E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11741 PF00010 HLH 2.90E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00606 - - cmos:111449017 436.802