Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00608 ATGGAACCTCAGTGCTGCGAGTTCTGTGGAGTGGAGAAAGCGATTGTTTACTGTAAATCTGATTCGGCGCGTCTCTGTTTGCATTGCGATTACATCGTTCATTCTGCTAATTCATTATCACGACGCCATCTTCGATCGTTGCTGTGCGACAAGTGCAATGCTCACCCTGCCATTCTGCGCTGTATGGATGATAAAGTCTCCCTCTGTCAGGGCTGTGACTGGAGCGCCGATGATTGTTCTTCCCTTCCCCAACGCACTCACCTTCTTCATTCTTACACTGGTTCCCCTTCCACGTCTGAGTTCTCCAGGATTTGTACTTCCCTTCTCGATTCCACTTCTTGTACCACTGCCTTCGACGCCACCGCTGATTGGACCTCGCTTACGACGCCTTATGTTATTGCCGATTCCATCGATTTGACGGACGTTGAAGCTCCCTCTGCCGCTGAAAATTTGAATGACGTTCAAACTTGCTCTAAGTTTGAGACCTGGATCGCCGATCCTGCTTCTGCGTCTCCTGAGAATCCTTCTTATCAACCGGATTTTCTTTCCGATGACTCGAATCCTCCAAAGGATGCTGAAACCAATGAAAATAATGATATATGTGAGAGTCTTAATCTTGGCGATCTTTCTCTCCACTTGGAAAATGGGGAAGGGTTGTTTGACTCTCCGAAAGATACAATGAAATTCGAGTTTGATGCTGGAGAATTGGAGTGTCTTCTAATTGACAGAAACTTTCCGGTCACTGAATCTAATGTTCCTGTTGAGGACACTATCGAGGCCTCAGATTATACGGGATTTCAATCATCTGAAGTCGATATTTCCATGAACATGATTCGAAACGGCAATTCAAATTGCACGCTTATAAATCCTAGTTGCAAAGGAAATTTCAACATTGGATTTCCTGCTGCTCAGGTTCATTCAAGTATATCAGTTTCACTGTCAAATATCACTGGCGAAAGCAGTGGTGCAGATTATCAAGACTGTGGTTTATCGCCGGCGTTTTTGACTGAAACCTCATGGGATCCTAGCATGGAAGCTATTGGTCCACTAGCAAAGGATCGGAATAGGGATAAAGCTAAGATGAGATACAATGAAAAGAAGAAAACAAGAACATTTGGAAAGCAAATAAGATACGCATCTCGCAAAGCCAGAGCTGATACTAGAAAAAGGGTTAAAGGTCGATTCGTGAAAGCAGGCGAAGCCTATGACTACGATCCTCTCGTGACAAGAAACTTTTGA 1239 44.39 MEPQCCEFCGVEKAIVYCKSDSARLCLHCDYIVHSANSLSRRHLRSLLCDKCNAHPAILRCMDDKVSLCQGCDWSADDCSSLPQRTHLLHSYTGSPSTSEFSRICTSLLDSTSCTTAFDATADWTSLTTPYVIADSIDLTDVEAPSAAENLNDVQTCSKFETWIADPASASPENPSYQPDFLSDDSNPPKDAETNENNDICESLNLGDLSLHLENGEGLFDSPKDTMKFEFDAGELECLLIDRNFPVTESNVPVEDTIEASDYTGFQSSEVDISMNMIRNGNSNCTLINPSCKGNFNIGFPAAQVHSSISVSLSNITGESSGADYQDCGLSPAFLTETSWDPSMEAIGPLAKDRNRDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRNF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2982028 2985614 - CmoCh20G006080.1 Cmo20g00608 404925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00608 412 MobiDBLite consensus disorder prediction 169 183 - -
Cmo20g00608 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 410 - -
Cmo20g00608 412 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Cmo20g00608 412 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cmo20g00608 412 CDD Bbox1_BBX-like 5 48 - -
Cmo20g00608 412 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 5 410 - -
Cmo20g00608 412 MobiDBLite consensus disorder prediction 168 197 - -
Cmo20g00608 412 Pfam CCT motif 356 398 IPR010402 GO:0005515
Cmo20g00608 412 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00244 Cmo20g00608 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01818 Cmo-Chr11:12734629 Cmo20g00608 Cmo-Chr20:2982028 3.37E-68 dispersed
Cmo18g00997 Cmo-Chr18:10895344 Cmo20g00608 Cmo-Chr20:2982028 3.71E-23 dispersed
Cmo19g00853 Cmo-Chr19:8279509 Cmo20g00608 Cmo-Chr20:2982028 6.20E-64 dispersed
Cmo20g00608 Cmo-Chr20:2982028 Cmo20g00696 Cmo-Chr20:3448685 2.06E-67 dispersed
Cmo11g01914 Cmo-Chr11:13299106 Cmo20g00608 Cmo-Chr20:2982028 9.28E-12 wgd
Cmo19g00959 Cmo-Chr19:8734617 Cmo20g00608 Cmo-Chr20:2982028 4.26E-11 wgd
Cmo02g00155 Cmo-Chr2:752523 Cmo20g00608 Cmo-Chr20:2982028 1.20E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11742 PF06203 CCT 1.30E-16 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00608 - - mcha:111011254 593.193