Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00615 ATGAACGATTTGCTCACGGACTCGTTTGTTAGCAATGGCAAAGGCGAGGTATCGAGAGATATCGATATCGAGAAGGGAACGCCAGTTGTGCTTAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGAGGTTGAGGTACAAGTAGATAAGCTTTCTGGGCTTCTTATCAAACTCAAGGATGCTAATGAGGAATCAAAGGCTGCTACAAAAGCATCACAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTGGGAAAAATAGCTCGCAATGTCAAAGGGAATCTGGAAGCTCTAAATAAAGATAACTTGACCAATAGGCAGAAGCCTGGGTGCCAAAAGGGAACAGCCATTGACAGAGCAAGAATGAACATGACAAATTCCTTAACAAAAAAGTTCAAGGATTTGATGATAGAATTTCAGGCCCTTCGTCAAAGAATTCAAGACGAGTACCGTGAAGTCGTGGAAAGACGAGTGATTACAGTTACCGGTACCCGACCAGATGAGACGATGATTGATGAACTTATAGAAACTGGAAATAGTGAACAAATATTCCAGAATGCATTTGAACATATGGGACGAGGAATGGTTATCAGTACCGTGGAAGAAATTCAGGAGCGACATGACGCGGTTAAAGAAATTGAGAAAAGGCTCTCAGAATTGCATCAGGTTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTCTGGACAACATAGAAAATCAGGTAACGAACGCAGTCGACCACGTTCGAACAGGAACCGATGCACTCCATACAGCAAAAAGTTTGCAAAAGAAATCAAGAAAATGCATGATGATCGCCATCATATTGCTGCTGGTTATAGCACTCATAATAGTCCTCTCAGTGCTGAAGCCATGGAAGAAGTAA 918 42.05 MNDLLTDSFVSNGKGEVSRDIDIEKGTPVVLSNSDMGMEAFNKQIQEVEVQVDKLSGLLIKLKDANEESKAATKASQMKAIKKRMEKDIDEVGKIARNVKGNLEALNKDNLTNRQKPGCQKGTAIDRARMNMTNSLTKKFKDLMIEFQALRQRIQDEYREVVERRVITVTGTRPDETMIDELIETGNSEQIFQNAFEHMGRGMVISTVEEIQERHDAVKEIEKRLSELHQVYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALHTAKSLQKKSRKCMMIAIILLLVIALIIVLSVLKPWKK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3011939 3016235 - CmoCh20G006150.1 Cmo20g00615 404932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00615 305 Pfam Syntaxin 41 242 IPR006011 GO:0016020
Cmo20g00615 305 CDD SNARE_syntaxin1-like 207 267 - -
Cmo20g00615 305 CDD SynN 38 195 IPR006011 GO:0016020
Cmo20g00615 305 Coils Coil 304 305 - -
Cmo20g00615 305 PANTHER SYNTAXIN 4 299 IPR045242 -
Cmo20g00615 305 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 4 299 - -
Cmo20g00615 305 SMART tSNARE_6 203 270 IPR000727 -
Cmo20g00615 305 Coils Coil 38 65 - -
Cmo20g00615 305 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Cmo20g00615 305 SMART SynN_4 33 159 IPR006011 GO:0016020
Cmo20g00615 305 Pfam SNARE domain 244 296 IPR000727 -
Cmo20g00615 305 Gene3D - 33 162 - -
Cmo20g00615 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Cmo20g00615 305 Gene3D - 204 301 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00163 Cmo20g00615 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00322 Cmo-Chr18:2085688 Cmo20g00615 Cmo-Chr20:3011939 3.38E-72 dispersed
Cmo14g01110 Cmo-Chr14:7488054 Cmo20g00615 Cmo-Chr20:3011939 3.06E-114 transposed
Cmo02g00163 Cmo-Chr2:782007 Cmo20g00615 Cmo-Chr20:3011939 1.18E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00615 K08486 - csv:101214355 508.834