Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00616 ATGTTCCAGTCAAGCATGATGGACGGTCAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCTAAAAGCGATCTTGCTCGAATCCAGGACGATGACTTCGATAGTGCCACAAAATCGGATAGCGATAATAACCATGAACTCGTCTCCGGTGATGACCAAGATCCTCGTCCTAAAAAGAAGCGGTACCATCGTCATACTCAACATCAAATCCAAGAAATGGAAGCATTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTGAACTTGGAGCCTTTACAAGTTAAGTTTTGGTTCCAAAACAAACGCACTCAAATGAAGGTAACTAAAAACAACAAAACCAAAGCTCCCAAAAGACACCCTTGTTTTTTTGTTACCTTAAACGTGTTTGGTTTGGTTGAGACATTTGAGCTGCCTTTCGAAACGCAGAATCAACACGAGCGGCATGAGAACACCCAACTCCGAACAGAAAATGAGAAGCTTCGAGCCGATAACATGAGATATAGAGAAGCCCTTAGCAATGCCTCATGTCCCAACTGCGGCGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAACGCCCGTCTTCGCGAAGAGATCGATCGCATTTCAGCCATTGCTGCGAAGTACGTAGGCAAGCCAGTAGTGAACTACCCTCTACTTTCTCCACCGGTTCCATCTCGACCACTAGAGCTGGGAATGGGCAACTTCGGACCACAACCCGGCCTTGGAGGAGACATCCATGCCTCCCCTGGTGACCTGATCCGATCAATCAGCGGCCCGATCGAGTCCGAAAAGCCCATGATCATCGAGCTTGCAGTTGCAGCCATGGAAGAGCTAACTAGAATGGCTCAGATGGGTGAGCCATTGTGGATGACTAGCCTGGATGGTTCGACCCATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGGCCTAAGCCTGCAGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCCGTTGTCATCATGAACCACATTAACCTCGTGGAGATTCTCATGGACGTGAATCAATGGTCGACTCTATTTTCTGGAATTGTGTCTAGAGCTATGACGCTTGAAGTATTATCCACCGGAGTTGCTGGAAATTACAATGGAGCTCTACAAGTGATGACGTCCGAGTTTCAAGTTCCATCGCCACTAGTCCCGACCCGGGAGAGCTACTATGTTCGATATTGCAAGCAGCACGGGGACGGGACATGGGCAGTGGTGGACGTTTCATTGGACGATCTGCGCCCTACCCCTGGAGTTAGATGTAGAAGAAGACCTTCTGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTCGAGCATGTTGAGGTGGACGATAGAGGGGTTCATAATCTTTACAAGCAGCTGGTGAGCTCCGGCCAAGCTTTTGGGGCCAAACGGTGGGTTACAACCTTAGATCGCCAATGTGAACGGCTTGCCAGCGCCATGGCCACCAATATTTCCACCGGTGATGTTGGAGTTATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTAGCTGAGAGAATGGTGATAAGCTTCTGCGCCGGAGTGAGCGCCTCCACAACCCACACATGGACTACTCTGTCCGGTACTGGTGCCGACGATGTTCGAGTCATGACCCGAAAGAGCATCGACGACCCCGGAAGACCTCCGGGTATTGTCTTGAGTGCTGCAACTTCCTTCTGGCTTCCTGTTCCTCCCAAAACAATCTTCGATTTCCTCCGAGATGAAAATTCTCGTAGCGAGGTATTCAAATTTACGTGGGACATTCTTTCCAATGGCGGAGTCGTTCAAGAAATGGCCCATATCGCCAACGGCCGCGACACTGGCAATTGCGTTTCTCTCTTACGCGTAAACAGCACGAATTCAAGCCAAAGCAACATGTTGATCCTGCAAGAAAGCTGCACGGACCCAACAGTGTCGTTCGTCATCTACGCACCGGTTGACATAGTAGCAATGAACGTCGTCCTCAACGGCGGAGATCCCGACTACGTAGCGCTTCTCCCCTCAGGGTTCGCCATTCTCCCCGATGGCGGCGGAGGAGAGGGTGTTTCAGGTGGGTCGTTGCTGACAGTTGCATTTCAGATACTGGTGGATTCGGTGCCAACGGCCAAACTGTCGCTTGGGTCGGTTGCAACGGTTAACAATCTGATTGCGTGTACGGTGGAGAGAATTAAAGCGTCATTATCATGTGAGGCTGCGTGA 2292 49.35 MFQSSMMDGQLLPLDMPQNTSKSDLARIQDDDFDSATKSDSDNNHELVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKVTKNNKTKAPKRHPCFFVTLNVFGLVETFELPFETQNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQPGLGGDIHASPGDLIRSISGPIESEKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTHVLNEDEYLRTFPRGIGPKPAGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNISTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKTIFDFLRDENSRSEVFKFTWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSTNSSQSNMLILQESCTDPTVSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3019339 3024311 + CmoCh20G006160.1 Cmo20g00616 404933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00616 763 MobiDBLite consensus disorder prediction 1 67 - -
Cmo20g00616 763 SUPERFAMILY Bet v1-like 278 507 - -
Cmo20g00616 763 Pfam Homeodomain 59 114 IPR001356 GO:0003677
Cmo20g00616 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 150 760 IPR042160 -
Cmo20g00616 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 120 IPR042160 -
Cmo20g00616 763 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Cmo20g00616 763 CDD homeodomain 59 114 IPR001356 GO:0003677
Cmo20g00616 763 SUPERFAMILY Homeodomain-like 47 114 IPR009057 -
Cmo20g00616 763 CDD START_ArGLABRA2_like 280 504 - -
Cmo20g00616 763 Pfam START domain 286 505 IPR002913 GO:0008289
Cmo20g00616 763 Gene3D - 339 504 IPR023393 -
Cmo20g00616 763 SMART HOX_1 57 120 IPR001356 GO:0003677
Cmo20g00616 763 Coils Coil 151 178 - -
Cmo20g00616 763 SUPERFAMILY Bet v1-like 524 755 - -
Cmo20g00616 763 Gene3D - 46 128 - -
Cmo20g00616 763 ProSiteProfiles START domain profile. 276 508 IPR002913 GO:0008289
Cmo20g00616 763 SMART START_1 285 505 IPR002913 GO:0008289
Cmo20g00616 763 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Cmo20g00616 763 MobiDBLite consensus disorder prediction 25 58 - -
Cmo20g00616 763 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 150 760 - -
Cmo20g00616 763 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 120 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01907 Cmo20g00616 CCT
Cmo19g00954 Cmo20g00616 CCT
Cmo11g01907 Cmo20g00616 ECH
Cmo19g00954 Cmo20g00616 ECH
Cmo02g00167 Cmo20g00616 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00550 Cmo-Chr3:5496170 Cmo20g00616 Cmo-Chr20:3019339 0 dispersed
Cmo13g00750 Cmo-Chr13:7339496 Cmo20g00616 Cmo-Chr20:3019339 0 dispersed
Cmo11g01907 Cmo-Chr11:13249775 Cmo20g00616 Cmo-Chr20:3019339 0 wgd
Cmo19g00954 Cmo-Chr19:8710347 Cmo20g00616 Cmo-Chr20:3019339 0 wgd
Cmo02g00167 Cmo-Chr2:799348 Cmo20g00616 Cmo-Chr20:3019339 0 wgd
Cmo20g00616 Cmo-Chr20:3019339 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11745 PF01852 START 2.50E-59 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00616 K09338 - csv:101214763 1342.02