Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00619 ATGAAGGTGTTTTGGATTAGGAGTGGCCATTGGGTCAGAACCATAGCTTTGATCTTTGCATTGTTCTTTGAGATATGGATGCCTTTGGGAGTGATTGGTATTGGTGTCTCTCAAAACACAAACGTTTCTTCTTCGAATCCGGGGGTGTTGAACGTTGGAGTTCTGTTCACTCTTGATTCAGTCATTGGAAGGTCGGCACAGCCTGCGATTTTAGCTGCGGTGGACGATGTCAATGCCGATAACAGTGTTCTTCCTGGAACAAAGCTGAAGTTGATCTTACACGACACGAACTGCAGTGGATTTCTTGGAACAGTGGAAGCCATGCAGATGATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAATCTTCAGGCATTGCTCATGTCATTTCCCATGTCATTAATGAACTCCATATACCTCTTCTATCATTTGGAGCTACAGATCCCACTTTATCTGCACTGCAATACCCGTATTTTGTTCGGACGACACAGAGTGATCACTTCCAGATGAACGCCATTGCTGATATGGTAGATTATTTTGGATGGAGAGAGGTGATTGCCATCTTTGTAGATGATGATAATGGCAGGAGCGGGATATCGGCATTGAGTGACGCCTTGGCAAAGAAACGAGCCAGGATCTCTTATAAGGCTGCTTTCTCTCCTGGATCCCCCAATAGCGTAATAAGTGAATTGTTGGTTTCGATAAACCTGATGGAATCTCGGGTGTATATCGTACATGTCAATCCCGACACTGGTTTATCAGTATTTTCATTAGCTAAGAAACTTCAGATGATGAGCAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATATCATGAATCATTTACAGGGCGTTGTAGCTCTTCGTCACCACACCCCGGACAGCGATCTGAAGAAAAATTTTGTCTCCAAATGGAAAGGACTGAAGTATAAGAAGAGTTCAAGCTTCAACTCTTATGCACTCTACGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTCGACACGTTTCTTAAAGAAGGTGGACATATATCCTTTTCTACTGACCCCAAGCTACGTGAAAACAATGGAAGCATACTGCACTTAAAATCACTTCGAGTTTTTAATGGCGGCGAACAACTCTTACAGACAATCAAGAGAACGAACTTCACGGGTGTAAGTGGACGAATTCAGTTTGGTGATGACAGAAATTTGATTCATCCAGCTTATGATATCCTCAACATTGGGGGTACTGGTACACGTAGAATCGGTTACTGGTCGAATCATTCGGGTTTATCAACTATTGCACCAGAGAATCTGTATACAAAGCCTCTTAATGCTTCCCCAAATAACCATCTATACAGTGTAATATGGCCGGGTGAAGTAACAAGCGTTCCTCGAGGATGGGTGTTCCCGCACAACGGGAAATCATTGCAAATTGTAGTACCTAACCGTGTGAGCTACAAAGCGTTTGTATCTAAAGACAAGAACCCTCCAGGGGTTAAAGGGTATTGTATAGATGTCTTTGAAGCTGCCTTAAACTTGTTGCCTTATCCAGTTCCTCGCACATATATATTATATGGAGATGGAAAAGACACTCCTGAGTACAGCAATCTTGTATATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGAGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAGCCATTTATGGAGTCGGGACTCGTTGTCGTTACTGTCGTCAACGAGGAGAAATCCAGTCCGTGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCCATATTCTTCATTTTCGTTGGAGCTGTTGTCTGGATTCTCGAGCACCGGACCAACGAAGAGTTCCGTGGTCCGCCAAGGCAACAACTCATTACAATATTCTGGTTTAGTTTCTCGACAATGTTCTTCTCTCACAAGGAAAACACCGTAAGCACCCTCGGACGGCTGGTGCTGATAATATGGCTCTTCGTCGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTAACGTCAAAGATCGAAGGGATTGATAGCTTAATCTCTGGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTAATGAGCTGAGTATAGCAGCTTCTAGGATCGTTAAACTGAAAAATCAGGAGGAATATGCCGATGCTCTTCGGCGTGGACCGGGGAATGGCGGGGTAGCTGCCATCGTTGATGAGCTTCCTTACGTCGAGCTTTTCTTGGCCGGGACGAACTGCATATTCAGGACGGTTGGACAGGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCAAAGAGACTCTCCTCTTGCAGTTGATTTATCAACAGCCATTCTTCAACTCTCGGAGAACGGCGATCTTCAAAAGATCCACGACAAATGGCTGTCACGAACCGAGTGTTCAATGAGCCTAAACCAAGTCGACGTAAACCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATATGTGGCATTGCCTGCTTTATTGCTCTTTCCATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCTGAAACCCAGCCTGAAGTCGAGGATATCGAACCTGTTAGGACGAGACGCCTTAGTCGTACTACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAATCAAAGGCAAGCTTAAAAGAAAAGCCAGTGAGAACAAACAAGCTAGCCAGAGCTCAGAGGCCCACCTTGATTCACCACCTTGA 2817 44.05 MKVFWIRSGHWVRTIALIFALFFEIWMPLGVIGIGVSQNTNVSSSNPGVLNVGVLFTLDSVIGRSAQPAILAAVDDVNADNSVLPGTKLKLILHDTNCSGFLGTVEAMQMMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDHFQMNAIADMVDYFGWREVIAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPNSVISELLVSINLMESRVYIVHVNPDTGLSVFSLAKKLQMMSSGYVWIATDWLPSFLDSFETNSPDIMNHLQGVVALRHHTPDSDLKKNFVSKWKGLKYKKSSSFNSYALYAYDSVWLAARALDTFLKEGGHISFSTDPKLRENNGSILHLKSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGTRRIGYWSNHSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEVTSVPRGWVFPHNGKSLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAALNLLPYPVPRTYILYGDGKDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVNEEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISGTDAIGVQEGSFALNYLINELSIAASRIVKLKNQEEYADALRRGPGNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGIACFIALSIFFFRVLFQYRRFTPETQPEVEDIEPVRTRRLSRTTSFMHFVDKKEAEIKGKLKRKASENKQASQSSEAHLDSPP 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3031474 3038379 - CmoCh20G006190.1 Cmo20g00619 404936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00619 938 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Cmo20g00619 938 PIRSF IGluLR_plant 15 937 IPR017103 -
Cmo20g00619 938 SUPERFAMILY Periplasmic binding protein-like II 460 826 - -
Cmo20g00619 938 MobiDBLite consensus disorder prediction 912 938 - -
Cmo20g00619 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 63 79 - -
Cmo20g00619 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 123 151 - -
Cmo20g00619 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 336 348 - -
Cmo20g00619 938 Gene3D - 478 593 - -
Cmo20g00619 938 Gene3D - 594 734 - -
Cmo20g00619 938 Gene3D - 69 413 - -
Cmo20g00619 938 PANTHER GLUTAMATE RECEPTOR 3.4 35 920 - -
Cmo20g00619 938 Gene3D - 778 832 - -
Cmo20g00619 938 SMART GluR_14 485 827 IPR001320 GO:0015276|GO:0016020
Cmo20g00619 938 CDD PBP1_GABAb_receptor_plant 51 439 IPR044440 -
Cmo20g00619 938 Pfam Receptor family ligand binding region 67 422 IPR001828 -
Cmo20g00619 938 Pfam Bacterial extracellular solute-binding proteins, family 3 494 826 IPR001638 -
Cmo20g00619 938 CDD GluR_Plant 482 825 - -
Cmo20g00619 938 SUPERFAMILY Periplasmic binding protein-like I 44 476 IPR028082 -
Cmo20g00619 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 920 - -
Cmo20g00619 938 Gene3D - 165 438 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01904 Cmo20g00619 CCT
Cmo02g00171 Cmo20g00619 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00376 Cmo-Chr7:1726781 Cmo20g00619 Cmo-Chr20:3031474 0 dispersed
Cmo09g00038 Cmo-Chr9:167186 Cmo20g00619 Cmo-Chr20:3031474 0 dispersed
Cmo11g01791 Cmo-Chr11:12588834 Cmo20g00619 Cmo-Chr20:3031474 0 dispersed
Cmo20g00619 Cmo-Chr20:3031474 Cmo20g00620 Cmo-Chr20:3045107 0 tandem
Cmo05g00281 Cmo-Chr5:1213860 Cmo20g00619 Cmo-Chr20:3031474 1.18E-137 transposed
Cmo11g01904 Cmo-Chr11:13228629 Cmo20g00619 Cmo-Chr20:3031474 0 wgd
Cmo02g00170 Cmo-Chr2:810572 Cmo20g00619 Cmo-Chr20:3031474 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00619 K05387 - csv:101215485 1687.16