Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00620 ATGGAGAGCCTATTAGTTCTTACACTGATTAGTTCGATATGGGTATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCCGCGGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCCATTATAGGAAGAGCGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGCAGATCCTTCCATTCTCAATGGAACAAGGCTAAATTTGATCATGGCAGATACACATTGCAATGTTCTCTTGGGTTCTATTCGAGCTTTCCAGGTTCTTGAGAAAGACGTAGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATCATCTCCAAGTGCCACTTATATCATACGCTGCCACTGATCCAACTTTATCTGCCCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATGCCTATCAAATGACTGCCATGGCAGAATTAATTGACTTTTATGAGTGGAAGGAAGTGATCATTATCTTTGTGGATGATGATTATGGAAGAAATGGAATGTCCACTTTAACTGATGAACTTGACAAGAAGATGTTTAAAGTTTCTTACAAACTACCCTTACCTTCTCAGTTGAATCTCAGTGAAATCACAGACATGCTCAATAAATCCAAGTTGCTCGGTCCTCGAGTCTATGTTGTTCATGTTAATCCTGATCCTAGATTAAGCATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTTCTACCTTAGATTCTATTCTGCCCGTACACCAAACCTCTCTAAACATCCTTCAAGGAGTGGTTGTACTTCGTCAATATACGCCTGAATCCAGCCAAAAAACAACATTATGGTCTCGTTTAAGGAAGATGCTGCCAGAAGACTCGAGAAATTCTTCGATGAATGTCCATGCTCTTAGTGCCTACGATACCATTCAAGTAGTTGCACGTGCGATCGATAAGTTTCTAAATGGAGGTAGGAGCATTAGCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGGAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCGGATTGAGTTTAATTCAGATCGAAACATTGTCAGTAGAGGCTATGAGGTGATCAATATTGATCGGACGGGATTGCGTCGAGTTGGTTATTGGTCCAATGGCACAGGCTTTACTATCCAATCCCCAGAAGCTCTGAAACAGAAACGAATTACTTATACCCACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACGCAGAGTAAGTTTCATTGAATTTGTTACAGCAGTCAATGGAAGCCACAAAAACATTCAAGGATACTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCCTACGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGCTATGATGATCTTGTGAAGAACATTGCAAATGGTATATTTGATGCAGCTGTTGGAGATATCGCAATTGTAACCAATCGCACAAAGGTCGTGGATTTTTCTCAGCCTTTTGCTTCTACTGGCCTTGTTATTGTGGCTCCAATAACAAATTCAAAGTCGAATGCTTGGGTGTTCCTCAAACCATTTACAGTCGAGATGTGGTGCGTTACCTCGGCCTCCTTCTTCATGATTGGAGCAGTCATATGGCTTCTCGAGCACCGAGTAAATGATGATTTCCGTGGTCCGCCAAAGAGGCAGCTAGTGACAGTTATTCTGTTCAGCTTCTCAACATTGTTCAAAACAAATCAGGAAGTTACAATAAGTCCACTTGGACGTATGGTAATGGTGATGTGGCTTTTCTTATTGATGGTTATCACGTCAAGCTACACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGAGGACTTGATTACTAAGGAACAGCCAATTGGGTACCAGGTAGGATCGTTCGCGTTTAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTCGTACCCCTAGGTTCTCCAGAAGAATATGAATCAGCATTGCTCAAAGGGCCATTCAAGAGAGGAGGGGTGGCGGCCATTATTGATGAACTTCCATATATGGAACTATTTTTATCAGGGAGGAACGATTTCGGAATGATCGGACAACCGTTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCGGTAGACATTTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAACTTCAGAAGATCCATGAGAAGTGGTTCTGCAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAACCTGAGCCTAACCAACTTCACTTGGTTAGCTTCTGGGGTCTATATCTGCTGTGCGGTGCCTTCTCACTCGTGTGTCTTTTTATATTTTTGTTTCGCATAGTTCGACAATTCGCTCGCTACATACGACAACAGAAGGAATCATCTCATGCAGAATTAGTGTCATCAAATTCAAACTCGAACTGGACTCAGGTTGTATACAAGTTTTTCGACTTCGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTTCGAAAGCATGA 2721 42.34 MESLLVLTLISSIWVFLAGSACCQRPAVVNIGAVFTFDSIIGRAAKVAMEAAVSDVNADPSILNGTRLNLIMADTHCNVLLGSIRAFQVLEKDVVAIVGPQSSVVAHMVLQIANHLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMAELIDFYEWKEVIIIFVDDDYGRNGMSTLTDELDKKMFKVSYKLPLPSQLNLSEITDMLNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSSTLDSILPVHQTSLNILQGVVVLRQYTPESSQKTTLWSRLRKMLPEDSRNSSMNVHALSAYDTIQVVARAIDKFLNGGRSISFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGRIEFNSDRNIVSRGYEVINIDRTGLRRVGYWSNGTGFTIQSPEALKQKRITYTHLNQTLGNVTWPGGKTERPRGWVIADNERPLIIGVPRRVSFIEFVTAVNGSHKNIQGYCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNIANGIFDAAVGDIAIVTNRTKVVDFSQPFASTGLVIVAPITNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEVTISPLGRMVMVMWLFLLMVITSSYTASLTSILTVQQLSSPIKGLEDLITKEQPIGYQVGSFAFSYLTESLYLPRSRLVPLGSPEEYESALLKGPFKRGGVAAIIDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDISTAILKLSENGKLQKIHEKWFCKMGCPGERRRKPEPNQLHLVSFWGLYLLCGAFSLVCLFIFLFRIVRQFARYIRQQKESSHAELVSSNSNSNWTQVVYKFFDFVDEKEEAIKRLFSKA 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3045107 3050442 - CmoCh20G006200.1 Cmo20g00620 404937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00620 906 PANTHER GLUTAMATE RECEPTOR 3.7 11 902 - -
Cmo20g00620 906 Gene3D - 144 418 - -
Cmo20g00620 906 SUPERFAMILY Periplasmic binding protein-like II 441 808 - -
Cmo20g00620 906 SUPERFAMILY Periplasmic binding protein-like I 22 458 IPR028082 -
Cmo20g00620 906 Gene3D - 47 394 - -
Cmo20g00620 906 SMART GluR_14 467 810 IPR001320 GO:0015276|GO:0016020
Cmo20g00620 906 Pfam Receptor family ligand binding region 46 404 IPR001828 -
Cmo20g00620 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 902 - -
Cmo20g00620 906 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Cmo20g00620 906 Gene3D - 756 815 - -
Cmo20g00620 906 CDD PBP1_GABAb_receptor_plant 30 420 IPR044440 -
Cmo20g00620 906 Gene3D - 474 577 - -
Cmo20g00620 906 CDD GluR_Plant 464 808 - -
Cmo20g00620 906 Gene3D - 578 711 - -
Cmo20g00620 906 PIRSF IGluLR_plant 1 905 IPR017103 -
Cmo20g00620 906 Pfam Bacterial extracellular solute-binding proteins, family 3 487 808 IPR001638 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00170 Cmo20g00620 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00171 Cmo-Chr2:818809 Cmo20g00620 Cmo-Chr20:3045107 0 dispersed
Cmo11g01904 Cmo-Chr11:13228629 Cmo20g00620 Cmo-Chr20:3045107 0 dispersed
Cmo20g00620 Cmo-Chr20:3045107 Cmo11g01791 Cmo-Chr11:12588834 0 dispersed
Cmo20g00619 Cmo-Chr20:3031474 Cmo20g00620 Cmo-Chr20:3045107 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00620 K05387 - csv:101215715 1659.04