Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00648 ATGCCAAATTTGCCTCCCAAATTCCCAAACTTCAACACTCCAAATCCCCCTGCACACGACCACTTCCTTTCCTTCTCGTCCCCTCGACAAAGTCTCCACCATCGCTCCGTTAGCGACTCGATCGCCTTCCTCGAAACGCCGACGATGAATCAAACCATTTTAGGCTCGGCTGCACCATCCAACAATAATGCATTTGATGTGTTTGATGAAGATGATCAGCCAACTTCTTCCGAGGCACATAACGATGGAATCACTGACTCGAAACGAGTCAAGAGAATCTTGGCAAACAGACAATCTGCACGAAGATCACGGGTGAGAAAGCTGCAATATATTACAGAACTGGAACAGAGTATCAGTACATTACAGGCCGAAGTTTCAATGTTGTCACCACGAGTAGCATTTCTAGATCAACAACGACTACTTCTAAACGTGGACAATAGTGCTTTGAAGCAAAGAATCGCCTCCCTCTCCCAAGACAACATTTTCAAAGATGCACATGAAGAAGCATTGAAGAGGGAAATAGAGAGATTAGGGCAATTATACCATCGGCAACAGAAGAATCGGAGAATGAATAGCAATGGGCCGTCGCCGGTAGCAGCCGACGAGCCCATATCTCCGGGAGATAAAAACCAGACGCTTCTCTATGTTTGA 651 46.08 MPNLPPKFPNFNTPNPPAHDHFLSFSSPRQSLHHRSVSDSIAFLETPTMNQTILGSAAPSNNNAFDVFDEDDQPTSSEAHNDGITDSKRVKRILANRQSARRSRVRKLQYITELEQSISTLQAEVSMLSPRVAFLDQQRLLLNVDNSALKQRIASLSQDNIFKDAHEEALKREIERLGQLYHRQQKNRRMNSNGPSPVAADEPISPGDKNQTLLYV 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3173495 3175337 - CmoCh20G006480.1 Cmo20g00648 404965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00648 216 MobiDBLite consensus disorder prediction 182 216 - -
Cmo20g00648 216 MobiDBLite consensus disorder prediction 1 20 - -
Cmo20g00648 216 Gene3D - 87 159 - -
Cmo20g00648 216 PANTHER BASIC LEUCINE ZIPPER 34 71 194 - -
Cmo20g00648 216 PANTHER BASIC LEUCINE ZIPPER 34 14 76 - -
Cmo20g00648 216 SMART brlzneu 84 148 IPR004827 GO:0003700|GO:0006355
Cmo20g00648 216 Coils Coil 167 187 - -
Cmo20g00648 216 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 138 IPR004827 GO:0003700|GO:0006355
Cmo20g00648 216 PANTHER BASIC LEUCINE ZIPPER 34 14 76 - -
Cmo20g00648 216 PANTHER BASIC LEUCINE ZIPPER 34 71 194 - -
Cmo20g00648 216 CDD bZIP_plant_RF2 89 139 IPR044759 GO:0003700|GO:0006355
Cmo20g00648 216 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Cmo20g00648 216 SUPERFAMILY Leucine zipper domain 88 142 IPR046347 GO:0003700|GO:0006355
Cmo20g00648 216 Pfam bZIP transcription factor 88 135 IPR004827 GO:0003700|GO:0006355
Cmo20g00648 216 MobiDBLite consensus disorder prediction 64 84 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01879 Cmo20g00648 CCT
Cmo19g00926 Cmo20g00648 CCT
Cmo19g00926 Cmo20g00648 ECH
Cmo11g01879 Cmo20g00648 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00648 Cmo-Chr20:3173495 Cmo20g00333 Cmo-Chr20:1631748 3.11E-20 dispersed
Cmo11g01879 Cmo-Chr11:13083836 Cmo20g00648 Cmo-Chr20:3173495 6.94E-58 wgd
Cmo19g00926 Cmo-Chr19:8586158 Cmo20g00648 Cmo-Chr20:3173495 4.43E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11747 PF00170 bZIP_1 6.80E-10 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00648 - - csv:105434687 263.077