Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00655 | ATGATTTCAAAAATGGCGGCCGATGGATCCAACCCTTCTCTTGCCAAGAAGAAAAGAAGCCTCCCCGGAACTCCAGATCCAGAAGCAGAGGTCATAGCCTTGTCGCCCAAGACCCTGATGGCAACAAAGAGGTTCGTTTGTGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACCTACAGCTGCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAACGAAGCAACAAAGAGGCAAAGAAGAGAGTGTATGTCTGCCCTGAAACAAGCTGCGTGCATCACCATCCATCGAGAGCGCTAGGAGACCTCACGGGGATAAAGAAGCACTTTTGTAGGAAGCATGGAGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGAGTTATGCGGTGCAATCGGATTGGAAAGCACATTCCAAAACTTGTGGCACTAGAGAATACAAATGTGACTGTGGTACTCTGTTTTCAAGGAGAGATAGCTTCATCAGTCATAGGGCGTTTTGTGATGCATTGGCTGAAGAAGCTGCAAGAGTAAGCAATGCCATGGCGCAACATTGGGTGATGTACTGTGACCCTGTTTGCCAAAACCCTGCAGTGGGGGATTATTATAGTCACCAATTACAGGAAGTGAATCAAACCCATATGGGGACTATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGGCAATTTCAAGCCCCGGCCACTCGGTGATACTCGAAGAGGGGTTTTTGTTTAATAATGGGAGTGAGTTTTGTAATTCTGGTACTACAAACCCAATTGTTGTTATTGGGAATGAGAATGAAATGTACACTGCAAAACGACGTCGTACTCAGAGTGAAGTAGAGTGTGGAGCAACAGGAGCAGCAGGACTGACAAGGGATTTTCTTGGAGTTGGTGCCCAAACTCTTTGCCACTCCTCACCAACAATCAAGGAATGGATTTAG | 957 | 46.29 | MISKMAADGSNPSLAKKKRSLPGTPDPEAEVIALSPKTLMATKRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKSYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFISHRAFCDALAEEAARVSNAMAQHWVMYCDPVCQNPAVGDYYSHQLQEVNQTHMGTMSATALLQKAAEIGAISSPGHSVILEEGFLFNNGSEFCNSGTTNPIVVIGNENEMYTAKRRRTQSEVECGATGAAGLTRDFLGVGAQTLCHSSPTIKEWI | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3205336 | 3206725 | + | CmoCh20G006550.1 | Cmo20g00655 | 404972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00655 | 318 | Gene3D | Classic Zinc Finger | 78 | 169 | - | - | |
Cmo20g00655 | 318 | SUPERFAMILY | beta-beta-alpha zinc fingers | 43 | 141 | IPR036236 | - | |
Cmo20g00655 | 318 | Gene3D | Classic Zinc Finger | 42 | 68 | - | - | |
Cmo20g00655 | 318 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 11 | 188 | - | - | |
Cmo20g00655 | 318 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 214 | 310 | - | - | |
Cmo20g00655 | 318 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cmo20g00655 | 318 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 47 | 67 | IPR013087 | - | |
Cmo20g00655 | 318 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 45 | 67 | IPR013087 | - | |
Cmo20g00655 | 318 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 11 | 188 | - | - | |
Cmo20g00655 | 318 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 214 | 310 | - | - | |
Cmo20g00655 | 318 | SMART | c2h2final6 | 45 | 67 | IPR013087 | - | |
Cmo20g00655 | 318 | SMART | c2h2final6 | 121 | 141 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01874 | Cmo20g00655 | CCT | |
Cmo02g00202 | Cmo20g00655 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00317 | Cmo-Chr8:1974557 | Cmo20g00655 | Cmo-Chr20:3205336 | 4.70E-111 | dispersed | |
Cmo14g01296 | Cmo-Chr14:10837630 | Cmo20g00655 | Cmo-Chr20:3205336 | 3.16E-106 | dispersed | |
Cmo20g00655 | Cmo-Chr20:3205336 | Cmo03g00791 | Cmo-Chr3:6482721 | 1.07E-110 | dispersed | |
Cmo11g01172 | Cmo-Chr11:6772071 | Cmo20g00655 | Cmo-Chr20:3205336 | 2.59E-107 | transposed | |
Cmo11g01874 | Cmo-Chr11:13053925 | Cmo20g00655 | Cmo-Chr20:3205336 | 5.17E-08 | wgd | |
Cmo02g00202 | Cmo-Chr2:947623 | Cmo20g00655 | Cmo-Chr20:3205336 | 9.29E-154 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11749 | None | None | None | None | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00655 | K25870 | - | cmax:111484111 | 626.32 |