Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00655 ATGATTTCAAAAATGGCGGCCGATGGATCCAACCCTTCTCTTGCCAAGAAGAAAAGAAGCCTCCCCGGAACTCCAGATCCAGAAGCAGAGGTCATAGCCTTGTCGCCCAAGACCCTGATGGCAACAAAGAGGTTCGTTTGTGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACCTACAGCTGCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAACGAAGCAACAAAGAGGCAAAGAAGAGAGTGTATGTCTGCCCTGAAACAAGCTGCGTGCATCACCATCCATCGAGAGCGCTAGGAGACCTCACGGGGATAAAGAAGCACTTTTGTAGGAAGCATGGAGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGAGTTATGCGGTGCAATCGGATTGGAAAGCACATTCCAAAACTTGTGGCACTAGAGAATACAAATGTGACTGTGGTACTCTGTTTTCAAGGAGAGATAGCTTCATCAGTCATAGGGCGTTTTGTGATGCATTGGCTGAAGAAGCTGCAAGAGTAAGCAATGCCATGGCGCAACATTGGGTGATGTACTGTGACCCTGTTTGCCAAAACCCTGCAGTGGGGGATTATTATAGTCACCAATTACAGGAAGTGAATCAAACCCATATGGGGACTATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGGCAATTTCAAGCCCCGGCCACTCGGTGATACTCGAAGAGGGGTTTTTGTTTAATAATGGGAGTGAGTTTTGTAATTCTGGTACTACAAACCCAATTGTTGTTATTGGGAATGAGAATGAAATGTACACTGCAAAACGACGTCGTACTCAGAGTGAAGTAGAGTGTGGAGCAACAGGAGCAGCAGGACTGACAAGGGATTTTCTTGGAGTTGGTGCCCAAACTCTTTGCCACTCCTCACCAACAATCAAGGAATGGATTTAG 957 46.29 MISKMAADGSNPSLAKKKRSLPGTPDPEAEVIALSPKTLMATKRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKSYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFISHRAFCDALAEEAARVSNAMAQHWVMYCDPVCQNPAVGDYYSHQLQEVNQTHMGTMSATALLQKAAEIGAISSPGHSVILEEGFLFNNGSEFCNSGTTNPIVVIGNENEMYTAKRRRTQSEVECGATGAAGLTRDFLGVGAQTLCHSSPTIKEWI 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3205336 3206725 + CmoCh20G006550.1 Cmo20g00655 404972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00655 318 Gene3D Classic Zinc Finger 78 169 - -
Cmo20g00655 318 SUPERFAMILY beta-beta-alpha zinc fingers 43 141 IPR036236 -
Cmo20g00655 318 Gene3D Classic Zinc Finger 42 68 - -
Cmo20g00655 318 PANTHER ZINC FINGER PROTEIN MAGPIE 11 188 - -
Cmo20g00655 318 PANTHER ZINC FINGER PROTEIN MAGPIE 214 310 - -
Cmo20g00655 318 MobiDBLite consensus disorder prediction 1 29 - -
Cmo20g00655 318 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Cmo20g00655 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 67 IPR013087 -
Cmo20g00655 318 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 188 - -
Cmo20g00655 318 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 214 310 - -
Cmo20g00655 318 SMART c2h2final6 45 67 IPR013087 -
Cmo20g00655 318 SMART c2h2final6 121 141 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01874 Cmo20g00655 CCT
Cmo02g00202 Cmo20g00655 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00317 Cmo-Chr8:1974557 Cmo20g00655 Cmo-Chr20:3205336 4.70E-111 dispersed
Cmo14g01296 Cmo-Chr14:10837630 Cmo20g00655 Cmo-Chr20:3205336 3.16E-106 dispersed
Cmo20g00655 Cmo-Chr20:3205336 Cmo03g00791 Cmo-Chr3:6482721 1.07E-110 dispersed
Cmo11g01172 Cmo-Chr11:6772071 Cmo20g00655 Cmo-Chr20:3205336 2.59E-107 transposed
Cmo11g01874 Cmo-Chr11:13053925 Cmo20g00655 Cmo-Chr20:3205336 5.17E-08 wgd
Cmo02g00202 Cmo-Chr2:947623 Cmo20g00655 Cmo-Chr20:3205336 9.29E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11749 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00655 K25870 - cmax:111484111 626.32