Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo20g00664 | ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCTCAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCAATGTGCATTGACGGGTCGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTATTGAAGGCATATGGGGAGCTTCCGGAGAACACCCGCCTCAACGAGGGTATCGCCGGCGGTATCGACGATGAGGATGATGGCGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG | 438 | 48.4 | MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGVDDYLEFEDEDIDKI | 145 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 3242551 | 3242988 | + | CmoCh20G006640.1 | Cmo20g00664 | 404981 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo20g00664 | 145 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE | 1 | 145 | - | - | |
| Cmo20g00664 | 145 | SUPERFAMILY | Nucleic acid-binding proteins | 2 | 144 | IPR012340 | - | |
| Cmo20g00664 | 145 | TIGRFAM | eIF-1A: translation initiation factor eIF-1A | 14 | 110 | IPR001253 | GO:0003743|GO:0006413 | |
| Cmo20g00664 | 145 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cmo20g00664 | 145 | CDD | S1_IF1A | 33 | 109 | IPR001253 | GO:0003743|GO:0006413 | |
| Cmo20g00664 | 145 | Gene3D | - | 2 | 145 | IPR012340 | - | |
| Cmo20g00664 | 145 | Pfam | Translation initiation factor 1A / IF-1 | 32 | 93 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
| Cmo20g00664 | 145 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 41 | 63 | IPR018104 | GO:0003743|GO:0006413 | |
| Cmo20g00664 | 145 | PANTHER | EIF-1A | 1 | 145 | IPR001253 | GO:0003743|GO:0006413 | |
| Cmo20g00664 | 145 | Hamap | Translation initiation factor 1A [eif1a]. | 16 | 110 | IPR001253 | GO:0003743|GO:0006413 | |
| Cmo20g00664 | 145 | ProSiteProfiles | S1 domain IF1 type profile. | 22 | 96 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
| Cmo20g00664 | 145 | SMART | eIF1neu4 | 28 | 110 | IPR001253 | GO:0003743|GO:0006413 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g01652 | Cmo-Chr6:11464500 | Cmo20g00664 | Cmo-Chr20:3242551 | 9.36E-101 | dispersed | |
| Cmo14g01510 | Cmo-Chr14:12111999 | Cmo20g00664 | Cmo-Chr20:3242551 | 8.57E-101 | dispersed | |
| Cmo20g00664 | Cmo-Chr20:3242551 | Cmo20g00665 | Cmo-Chr20:3244275 | 3.18E-102 | tandem | |
| Cmo11g01868 | Cmo-Chr11:12988935 | Cmo20g00664 | Cmo-Chr20:3242551 | 2.86E-89 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo20g00664 | K03236 | - | ini:109155805 | 264.233 |