Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00670 ATGTCCTGCCGCCTCGACCCGACGCAAGAAAAACCAACTGAACGGAACAGAGAGAGAGAGAGAGTTCTTTTTTTCTCGCTCCGTTTCTTCGGAGATTTTCTGTCCGGCATCACCACCAAGATGCCAGATGAAAATTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACAATGATCTTCTTGGGTCTGGAGCAGTGAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGAATTGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGGGATCCAATGTTCATTAACCGCTTGAGGTCTGAGGTTCAGCTGCTGAGCACGTTAAACAACAAATATATAATTGTTTGTTACAGTGTTTGGAATGATGATGAGCATAAGACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGAATATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAACAGGTACTCGAGGGATTGGATTATCTTCATACTCACGAACCTTGCATTATTCACAGGGACCTCAACTGCAGTAACATATTTGTCAATGGTAACATTGGGCAGGTTAAAATAGGCGATCTAGGTCTTGCAGCTATAGTTGGCAGGAGTCATGCTGCACATTCGATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAAGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCGATGTGTTTGCTCGAGATGGTTACAATGGAGATACCATACAGTGAATGTGATAGTGTTGCGAAAATATTCAGGAAGGTGACAACTGGAATAAAACCCCAAGCATTAGACAAAGTGACTAATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGAGCAAGACCTTCCGCTTCCGAACTTCTCAAGGATCCCTTCTTTGACGAAGTTGGGGATGAAGATTCTGAGCAGTCTTAA 1008 43.15 MSCRLDPTQEKPTERNRERERVLFFSLRFFGDFLSGITTKMPDENSIPFDRDAEPFVEVDPTGRFGRYNDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPMFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHKTLNFITEVCTSGNLREYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSVAKIFRKVTTGIKPQALDKVTNDEVRAFIEKCIAQPRARPSASELLKDPFFDEVGDEDSEQS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3271666 3276185 - CmoCh20G006700.1 Cmo20g00670 404987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00670 335 Gene3D Phosphorylase Kinase; domain 1 50 147 - -
Cmo20g00670 335 MobiDBLite consensus disorder prediction 311 335 - -
Cmo20g00670 335 Gene3D Transferase(Phosphotransferase) domain 1 149 329 - -
Cmo20g00670 335 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 41 327 - -
Cmo20g00670 335 CDD STKc_WNK 64 324 - -
Cmo20g00670 335 SUPERFAMILY Protein kinase-like (PK-like) 59 325 IPR011009 -
Cmo20g00670 335 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 41 327 - -
Cmo20g00670 335 Pfam Protein kinase domain 70 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00670 335 ProSiteProfiles Protein kinase domain profile. 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01840 Cmo20g00670 CCT
Cmo19g00886 Cmo20g00670 CCT
Cmo19g00886 Cmo20g00670 ECH
Cmo11g01840 Cmo20g00670 ECH
Cmo02g00223 Cmo20g00670 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00880 Cmo-Chr6:5019086 Cmo20g00670 Cmo-Chr20:3271666 5.21E-165 dispersed
Cmo16g00981 Cmo-Chr16:6714689 Cmo20g00670 Cmo-Chr20:3271666 1.41E-156 dispersed
Cmo20g00670 Cmo-Chr20:3271666 Cmo13g00886 Cmo-Chr13:7991434 1.21E-125 dispersed
Cmo02g00223 Cmo-Chr2:1026703 Cmo20g00670 Cmo-Chr20:3271666 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75161 PF00069 Pkinase 8.80E-51 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00670 K08867 - csv:101222153 577.015