Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00673 ATGCAAGCTTCTCAGCTTCATAGAGATTCACATATGTCGAAGAGGCTATGTTATCAGCCAATTCAAGGAGCGGATACCTACTTTTTCTCCCAATTATGTTCTAGTGCTGGCAACCAAAGAGCTCAGCTCAATGTTGAGGACATCGGTGATCAGTACTGCACTCTGGAGTCGTCCTCTGGTAGCCAAGGCTACGCAGCTTACAACTCGACGTCGACTGTCACTTGCTCATCCAATGGGAGTACGGTATCACAACAGGATTCTTGTTCGAATCCCTCTGATCAGCATAATTCCATTGACTATGCATATGGCTCCCCTGTAAGCGGATCCAGCATAACAGATGATCTTAGTGATTTTAGACACAAATTAAGGGAACTGGAAAGTGTAATGCTTGGCCCTGATTCTGATGTTATTGATAGTTTTGATAGTATCTTCCAGGAGGGAACTGAGAATCCAGAGATGGGAACTTGGGGGCAAGTGATGGATGTTATCACCAAAGGAAGCTTAAAAAAGATCCTAATAGCTTGTGCTAAAGCTGTATCAGATAACGATGCGTTGATGGCGCAATGGCTGATGGATGAATTGCGTAAGATGGTTTCGGTTTGCGGTGAACCGATGCAGCGATTGGGAGCGTATATGCTTGAGGGGCTGGTTGCACGGTTAGCCTCCTCGGGTAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCACGAGCCGAGCTTCTCTCGTATATGCACATTCTTTACGAGGTTTGCCCGTACTTCAAATTCGGATACATGTCAGCCAATGGTGCCATTGCAGAAGCTATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAATGGATCACTTTGATTCAAGCTTTTGCAAGCAAGCCTGGTCGACCGCCTCACATTCGTATAACCGGTATAGATGATCCTGCATCGGCTTATGCTCGTGGAGGCGGGCTAGACATTGTTGGTAGGAGGCTTTCCAAGTTAGCAAAATTGTGTAATGTGCCATTTGAGTTTCACTCCGCTGCCATTTCTGGCAGCGACGTTCAGCAAAAAAACTTAAGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCATTCATGCTACACCATATGCCAGACGAGAGCGTAAGCACCGAAAATCACCGAGATAGACTATTGAGGCTGGTTAAGGGTCTGTCCCCAAAGGTAGTGACAGTCGTCGAACAAGAATCCAACACGAACACCGCTGCATTCTATCCCCGGTTCATCGAAACGCTGGATTACTACAACGCCATGTTCGAATCAATCGACGTTACTCTTCCAAGACAACACAAGGAGCGAATTAACATCGAGCAGCATTGTCTAGCAAGGGAAGTTGTGAACATACTAGCATGCGAAGGGGCCGAAAGAGTGGAACGACACGAGCTACTCGGAAAATGGAGACTCCGATTCGCAATGGCAGGATTTACAGCTTACCCATTAAGCTCTTTGGTTAATGCTACCATAAAAACGTTATTAGATAACTATTCTAACAGGTATAGGATTGAAGAGAGAGAAGGGGCTCTGTATCTAGGCTGGATGGATAGGGATTTGGTCGCTTCCTGTGCATGGAAGTGA 1617 45.7 MQASQLHRDSHMSKRLCYQPIQGADTYFFSQLCSSAGNQRAQLNVEDIGDQYCTLESSSGSQGYAAYNSTSTVTCSSNGSTVSQQDSCSNPSDQHNSIDYAYGSPVSGSSITDDLSDFRHKLRELESVMLGPDSDVIDSFDSIFQEGTENPEMGTWGQVMDVITKGSLKKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFASKPGRPPHIRITGIDDPASAYARGGGLDIVGRRLSKLAKLCNVPFEFHSAAISGSDVQQKNLSIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTVVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTAYPLSSLVNATIKTLLDNYSNRYRIEEREGALYLGWMDRDLVASCAWK 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3276967 3278583 - CmoCh20G006730.1 Cmo20g00673 404990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00673 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
Cmo20g00673 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 538 IPR005202 -
Cmo20g00673 538 Pfam GRAS domain family 168 538 IPR005202 -
Cmo20g00673 538 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 29 538 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00224 Cmo20g00673 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01214 Cmo-Chr1:9797559 Cmo20g00673 Cmo-Chr20:3276967 7.56E-175 dispersed
Cmo03g00608 Cmo-Chr3:5732226 Cmo20g00673 Cmo-Chr20:3276967 0 dispersed
Cmo06g00292 Cmo-Chr6:1456180 Cmo20g00673 Cmo-Chr20:3276967 8.59E-72 dispersed
Cmo06g00666 Cmo-Chr6:3372485 Cmo20g00673 Cmo-Chr20:3276967 0 dispersed
Cmo07g00344 Cmo-Chr7:1601636 Cmo20g00673 Cmo-Chr20:3276967 0 dispersed
Cmo08g00195 Cmo-Chr8:1140287 Cmo20g00673 Cmo-Chr20:3276967 1.65E-46 dispersed
Cmo14g00135 Cmo-Chr14:586514 Cmo20g00673 Cmo-Chr20:3276967 2.04E-69 dispersed
Cmo16g00983 Cmo-Chr16:6731154 Cmo20g00673 Cmo-Chr20:3276967 0 dispersed
Cmo20g00673 Cmo-Chr20:3276967 Cmo04g03104 Cmo-Chr4:21588625 3.70E-87 dispersed
Cmo01g01045 Cmo-Chr1:8241594 Cmo20g00673 Cmo-Chr20:3276967 4.24E-157 transposed
Cmo02g00224 Cmo-Chr2:1031828 Cmo20g00673 Cmo-Chr20:3276967 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11752 PF03514 GRAS 1.00E-135 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00673 - - csv:101221914 963.37