Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00682 | ATGGCGGAATCGGATAACGAATCGGGAGGGCACAACAGCAACGCGAACAGCGAGCTGTCTGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTTATAAGCTTCATAACAGGAGAGGCGTCAGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAATTGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTAGTGGTGGTGGTGGGCCCAGCGGCAGTGGTGCTAGTGGTGGAGTCAACTCTAGTACTGGTGGTGGTGGTGGTGTTGGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGCAGTAGTGGTGGATATCATCACATGGGAATCGGCGGAGGGAAGGAAGGAAATAGTGGTTCCCGTTGGAACCTTTTAAAGGTTCTCTCAAACTTTATAGCATCATTGATGGATGACATTTTTAGGAAGCTGATAATAATTTTTCCCCCTCTCATTTCAGGTCTTTCTCTGGTCATTGTGAAAGTTGTGGAAAAACTACTTTATGGGCACTATACTTGGATGGCGGCAACACTGGCTTCCCACAGCTGTTATCGCCGCGAAGGGAGTTTAAATGAGGGGAAAGGGAAACAAGGCTATGATCTATGTTTTTCAAGATCAATTTCACTTCATACATTCAATAAGATTGAGAGATCAATTTGGAGTCCTCCAAATTCTCAACATTTCAGAGTTCGAAATGAAATGCAACAGAATACATCGCTCCCAAGGTTAAGAGCTAATGGAAGAGCTGTTAAGATGGTACCTATAAATGAAGTAGTGAAAAAGAGAGCTGTATCTGCCAATAAAGTGGAGAACATAAATGGTAAAAAGCAAGTTATCAACGGGGCAAATGTAGTTAAGCGCAGCCCGTCTCCGCCATTGGTTAAGAGAACAAATGTTACAGACTCAAAGAAGCTCCCACCAATTGAGGGTCTTAAGGTTTTGCCCTCAGACGAGGGTTTCAGTTGGGCTAATGAAAATTATAACTCTTTCCAAAGGAGTATAGATGTTTGGAGTTTCATCATTTCCTTACGGGTTCGTGTTTTCTTAGAAAATACAAAATGGACGTATGCTGGAGGCTTTGAAGATAAGCAGAAAAAAAGAAGGAAAAAGACTGCCTCTTGGTTGCGGGAGCGTGTGCTGCAGCTCGGCCCCACTTTTATAAAGCTTGGACAGCTCTCCTCAACAAGGTCAGATCTGTTTCCACGTGAGTATGTGGACGAGCTTGCTAAGTTACAGGATAAAGTCCCTGCATTCTCTCCAAAGAAAGCAAGAGGGTTCATTGAGAGTGAACTGGGCGCCCCCATCGATACATTGTTCAAAGAATTCGAGGACCGTCCTATTGCTGCTGCAAGTCTTGGCCAGGTCCATCGTGCAATACTGCATAACGGAGAGAGGGTGATCGTAAAAGTTCAAAGACCTGGTCTCAAGAAGCTCTTCGACATTGATCTACGGAATTTGAAGCTAATTGCAGAGTATTTTCAAAGAAGTGAAACCTTTGGTGGTGCTTCAAGAGACTGGATTGGTATCTATGAAGAATGTGCTACGATTTTGTATCAAGAAATTGACTACATAAATGAAGGCAAAAATGCCGATAGATTTCGCAGGGATTTTCGTAATATAAAGTGGGTTCGAGTACCTCTCGTCTTTTGGGACTACACAGCTTTGAAGGTTTTGACTTTAGAGTATGTACCAGGGGTTAAGATAAACCAGCTGCATGTTCTGGATTCACGTGGCTTTAATCGCTCTCGAATTTCATCACATGCCATTGAAGCTTACTTAATTCAGATATTGAAGACTGGTTTCTTTCATGCTGATCCTCATCCGGGAAATCTTGCTATTGATGTGGATGAAGCAATCATATATTATGATTTTGGTATGATGGGGGAAATCAAATCCTTCACTAGAGAGCGGCTGCTCGATCTGTTCTATGCGGTTTATGAGAAAGATGCAAAAAAGGTTATGCAAAGGCTCATCGATCTCGAAGCACTTCAGCCGACAGGAGACATGTCATCGGTGAGGAGATCCATTCAATTCTTCTTGGACAATCAATTGAGCCAGTCACCAGACCAGCAGCAGACTCTAGCAGCAATCGGCGAGGATTTATTTGCAATAGCTCAAGATCAACCTTTTCGATTCCCTTCCACCTTTACCTTTGTTTTGAGGGCATTTTCTACCCTTGAAGGTATAGGCTACATGCTCGACCCAGATTTTTCGTTCGTGAAGATCGCTGCACCATATGCACAGGAGCTTTTAGAGTTAAAAAAGGAGCGAAGCGGAACACAACTTGTGCAGGAGATAAGAAAACAAGCCAATGATGCAAGAACATCCACCATTTCCATGCCATACAGAGTCCAAAAAATAGAGGAATTCGTACAACAGCTCGAGTCAGGGGACTTAAAGCTTCGAGTCCGAGTGCTAGAGTCTGAAAGAGCAGCAAGGAAAGCAACAGTACTTCAGATGACAACGATGTACACCGTGATGGGCGGTACCCTTTTGAACCTCGGTATCACCCTGATCTCTCAAGGCAACCAAGCTGTTGCAGGTGGATCGTTCGTCGGAGCAGGAGTTTTTATGGTGCTCGTTGTTCGTGAAACTCTGCTACACAATCCATACAAGAAGCATGTAAGTATAGAAGTCTTTTTTCTCTATTTATTTGCTAGAGCAAAAGCTTATTTGGATGACAGAAAAACAAGGCAGTTTAGAGAAGACGCTGCTGGTGTATACCTGCTGGAAGTAGCAGACACCGTTAAACGTCCTTCGAAGCTGCGTAGACTAAGGGCCCCGCTTTCCACTTCTATAATATCCCATTACCCAACTCCTTCTCTTGTCCTACTCCCACGCCCCCTCTTCTCTCTCAATCAACCATACACTCCTTTACCTTCAAAATCCATCATCGCCACCATCTTCTCGTCGAACCCCACTCATGGCGGTAAGAAATCCACTCACACCCAAGTTTCTTTCATCGCTAATCTCTTGCTTTCAGTTTCTCCTCTGTCTTTACCATGCTCTACTGAAGTTTTTCTAGATGTTTCTGATATTCGATTGGGCAATTCTCGATTGTTTCGAGATTGTCTCGCCATTGCGTTGGCTCTTCATATCATGAGGTTGGGTAGCTGCAAGGAAAAAGGCAGTAGCAGTCCGTTGCCGAAATTCGGCGAATGGGATGTGAACGACCCTGCATCTGCTGAGGGATTCACAGTAATCTTCAATAAAGCCAGGAATGAGAAAAAGGCTGGTGGCATGCCTGACTCTCCAGCAAAGGATGACCCCACATACAAGAATGGTTCTGTTCTTGGAAAGCCTCAACCTGTAAAAAAAATGGTTTTGCTGCTTGCAAGCTGCAGAATCGTGAGGCTTTTCGGATCGATGAACGGAGTTCAGCAGAATCAACACACTGACTTTTATCTCTTGAAGATTGAAGCTGCTGCATTTAGAATGTGTTTATGGATAATGCTGAACTCCTTGGGGTTTGGGGATGAAGATGATTAA | 3726 | 44.79 | MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTMGRQGEKDGSGGGGPSGSGASGGVNSSTGGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYGSSGGYHHMGIGGGKEGNSGSRWNLLKVLSNFIASLMDDIFRKLIIIFPPLISGLSLVIVKVVEKLLYGHYTWMAATLASHSCYRREGSLNEGKGKQGYDLCFSRSISLHTFNKIERSIWSPPNSQHFRVRNEMQQNTSLPRLRANGRAVKMVPINEVVKKRAVSANKVENINGKKQVINGANVVKRSPSPPLVKRTNVTDSKKLPPIEGLKVLPSDEGFSWANENYNSFQRSIDVWSFIISLRVRVFLENTKWTYAGGFEDKQKKRRKKTASWLRERVLQLGPTFIKLGQLSSTRSDLFPREYVDELAKLQDKVPAFSPKKARGFIESELGAPIDTLFKEFEDRPIAAASLGQVHRAILHNGERVIVKVQRPGLKKLFDIDLRNLKLIAEYFQRSETFGGASRDWIGIYEECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTALKVLTLEYVPGVKINQLHVLDSRGFNRSRISSHAIEAYLIQILKTGFFHADPHPGNLAIDVDEAIIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVMQRLIDLEALQPTGDMSSVRRSIQFFLDNQLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVLRAFSTLEGIGYMLDPDFSFVKIAAPYAQELLELKKERSGTQLVQEIRKQANDARTSTISMPYRVQKIEEFVQQLESGDLKLRVRVLESERAARKATVLQMTTMYTVMGGTLLNLGITLISQGNQAVAGGSFVGAGVFMVLVVRETLLHNPYKKHVSIEVFFLYLFARAKAYLDDRKTRQFREDAAGVYLLEVADTVKRPSKLRRLRAPLSTSIISHYPTPSLVLLPRPLFSLNQPYTPLPSKSIIATIFSSNPTHGGKKSTHTQVSFIANLLLSVSPLSLPCSTEVFLDVSDIRLGNSRLFRDCLAIALALHIMRLGSCKEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVKKMVLLLASCRIVRLFGSMNGVQQNQHTDFYLLKIEAAAFRMCLWIMLNSLGFGDEDD | 1241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3345325 | 3357817 | + | CmoCh20G006820.1 | Cmo20g00682 | 404999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00682 | 1241 | PANTHER | CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED | 388 | 935 | - | - | |
Cmo20g00682 | 1241 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 27 | 91 | IPR003958 | - | |
Cmo20g00682 | 1241 | PANTHER | PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 7, CHLOROPLASTIC | 388 | 935 | - | - | |
Cmo20g00682 | 1241 | SUPERFAMILY | Protein kinase-like (PK-like) | 491 | 826 | IPR011009 | - | |
Cmo20g00682 | 1241 | Gene3D | Histone, subunit A | 15 | 132 | IPR009072 | GO:0046982 | |
Cmo20g00682 | 1241 | SUPERFAMILY | Histone-fold | 24 | 128 | IPR009072 | GO:0046982 | |
Cmo20g00682 | 1241 | CDD | ABC1_ADCK3-like | 489 | 736 | - | - | |
Cmo20g00682 | 1241 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo20g00682 | 1241 | Pfam | ABC1 atypical kinase-like domain | 489 | 734 | IPR004147 | - | |
Cmo20g00682 | 1241 | PRINTS | CCAAT-binding transcription factor subunit A signature | 74 | 92 | - | - | |
Cmo20g00682 | 1241 | PRINTS | CCAAT-binding transcription factor subunit A signature | 93 | 111 | - | - | |
Cmo20g00682 | 1241 | PRINTS | CCAAT-binding transcription factor subunit A signature | 55 | 73 | - | - | |
Cmo20g00682 | 1241 | MobiDBLite | consensus disorder prediction | 115 | 149 | - | - | |
Cmo20g00682 | 1241 | MobiDBLite | consensus disorder prediction | 1155 | 1175 | - | - | |
Cmo20g00682 | 1241 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo20g00682 | 1241 | Pfam | Cleavage site for pathogenic type III effector avirulence factor Avr | 1124 | 1157 | IPR008700 | - | |
Cmo20g00682 | 1241 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 58 | 74 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00240 | Cmo-Chr2:1129964 | Cmo20g00682 | Cmo-Chr20:3345325 | 7.11E-31 | dispersed | |
Cmo03g00808 | Cmo-Chr3:6541066 | Cmo20g00682 | Cmo-Chr20:3345325 | 9.73E-103 | dispersed | |
Cmo04g00271 | Cmo-Chr4:1368977 | Cmo20g00682 | Cmo-Chr20:3345325 | 6.33E-52 | dispersed | |
Cmo04g00847 | Cmo-Chr4:4228134 | Cmo20g00682 | Cmo-Chr20:3345325 | 1.23E-55 | dispersed | |
Cmo04g01312 | Cmo-Chr4:6677894 | Cmo20g00682 | Cmo-Chr20:3345325 | 1.98E-48 | dispersed | |
Cmo06g00346 | Cmo-Chr6:1673581 | Cmo20g00682 | Cmo-Chr20:3345325 | 2.46E-54 | dispersed | |
Cmo09g01019 | Cmo-Chr9:5434190 | Cmo20g00682 | Cmo-Chr20:3345325 | 2.53E-23 | dispersed | |
Cmo14g00178 | Cmo-Chr14:811623 | Cmo20g00682 | Cmo-Chr20:3345325 | 6.34E-54 | dispersed | |
Cmo16g00726 | Cmo-Chr16:3621082 | Cmo20g00682 | Cmo-Chr20:3345325 | 7.01E-57 | dispersed | |
Cmo16g00996 | Cmo-Chr16:6867739 | Cmo20g00682 | Cmo-Chr20:3345325 | 1.06E-19 | dispersed | |
Cmo16g01006 | Cmo-Chr16:6914249 | Cmo20g00682 | Cmo-Chr20:3345325 | 6.99E-54 | dispersed | |
Cmo18g00186 | Cmo-Chr18:1273541 | Cmo20g00682 | Cmo-Chr20:3345325 | 4.18E-15 | dispersed | |
Cmo18g00562 | Cmo-Chr18:4613008 | Cmo20g00682 | Cmo-Chr20:3345325 | 4.52E-06 | dispersed | |
Cmo02g00239 | Cmo-Chr2:1123519 | Cmo20g00682 | Cmo-Chr20:3345325 | 0 | transposed | |
Cmo08g01004 | Cmo-Chr8:6520433 | Cmo20g00682 | Cmo-Chr20:3345325 | 1.80E-61 | transposed | |
Cmo12g00328 | Cmo-Chr12:2043155 | Cmo20g00682 | Cmo-Chr20:3345325 | 4.01E-67 | transposed | |
Cmo17g01087 | Cmo-Chr17:8978176 | Cmo20g00682 | Cmo-Chr20:3345325 | 6.28E-47 | transposed | |
Cmo02g00237 | Cmo-Chr2:1117825 | Cmo20g00682 | Cmo-Chr20:3345325 | 4.28E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11755 | PF03109 | ABC1 | 3.40E-37 | CL0016 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00682 | - | K13457 | cmax:111483688 | 1325.46 |