Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00682 ATGGCGGAATCGGATAACGAATCGGGAGGGCACAACAGCAACGCGAACAGCGAGCTGTCTGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTTATAAGCTTCATAACAGGAGAGGCGTCAGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAATTGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTAGTGGTGGTGGTGGGCCCAGCGGCAGTGGTGCTAGTGGTGGAGTCAACTCTAGTACTGGTGGTGGTGGTGGTGTTGGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGCAGTAGTGGTGGATATCATCACATGGGAATCGGCGGAGGGAAGGAAGGAAATAGTGGTTCCCGTTGGAACCTTTTAAAGGTTCTCTCAAACTTTATAGCATCATTGATGGATGACATTTTTAGGAAGCTGATAATAATTTTTCCCCCTCTCATTTCAGGTCTTTCTCTGGTCATTGTGAAAGTTGTGGAAAAACTACTTTATGGGCACTATACTTGGATGGCGGCAACACTGGCTTCCCACAGCTGTTATCGCCGCGAAGGGAGTTTAAATGAGGGGAAAGGGAAACAAGGCTATGATCTATGTTTTTCAAGATCAATTTCACTTCATACATTCAATAAGATTGAGAGATCAATTTGGAGTCCTCCAAATTCTCAACATTTCAGAGTTCGAAATGAAATGCAACAGAATACATCGCTCCCAAGGTTAAGAGCTAATGGAAGAGCTGTTAAGATGGTACCTATAAATGAAGTAGTGAAAAAGAGAGCTGTATCTGCCAATAAAGTGGAGAACATAAATGGTAAAAAGCAAGTTATCAACGGGGCAAATGTAGTTAAGCGCAGCCCGTCTCCGCCATTGGTTAAGAGAACAAATGTTACAGACTCAAAGAAGCTCCCACCAATTGAGGGTCTTAAGGTTTTGCCCTCAGACGAGGGTTTCAGTTGGGCTAATGAAAATTATAACTCTTTCCAAAGGAGTATAGATGTTTGGAGTTTCATCATTTCCTTACGGGTTCGTGTTTTCTTAGAAAATACAAAATGGACGTATGCTGGAGGCTTTGAAGATAAGCAGAAAAAAAGAAGGAAAAAGACTGCCTCTTGGTTGCGGGAGCGTGTGCTGCAGCTCGGCCCCACTTTTATAAAGCTTGGACAGCTCTCCTCAACAAGGTCAGATCTGTTTCCACGTGAGTATGTGGACGAGCTTGCTAAGTTACAGGATAAAGTCCCTGCATTCTCTCCAAAGAAAGCAAGAGGGTTCATTGAGAGTGAACTGGGCGCCCCCATCGATACATTGTTCAAAGAATTCGAGGACCGTCCTATTGCTGCTGCAAGTCTTGGCCAGGTCCATCGTGCAATACTGCATAACGGAGAGAGGGTGATCGTAAAAGTTCAAAGACCTGGTCTCAAGAAGCTCTTCGACATTGATCTACGGAATTTGAAGCTAATTGCAGAGTATTTTCAAAGAAGTGAAACCTTTGGTGGTGCTTCAAGAGACTGGATTGGTATCTATGAAGAATGTGCTACGATTTTGTATCAAGAAATTGACTACATAAATGAAGGCAAAAATGCCGATAGATTTCGCAGGGATTTTCGTAATATAAAGTGGGTTCGAGTACCTCTCGTCTTTTGGGACTACACAGCTTTGAAGGTTTTGACTTTAGAGTATGTACCAGGGGTTAAGATAAACCAGCTGCATGTTCTGGATTCACGTGGCTTTAATCGCTCTCGAATTTCATCACATGCCATTGAAGCTTACTTAATTCAGATATTGAAGACTGGTTTCTTTCATGCTGATCCTCATCCGGGAAATCTTGCTATTGATGTGGATGAAGCAATCATATATTATGATTTTGGTATGATGGGGGAAATCAAATCCTTCACTAGAGAGCGGCTGCTCGATCTGTTCTATGCGGTTTATGAGAAAGATGCAAAAAAGGTTATGCAAAGGCTCATCGATCTCGAAGCACTTCAGCCGACAGGAGACATGTCATCGGTGAGGAGATCCATTCAATTCTTCTTGGACAATCAATTGAGCCAGTCACCAGACCAGCAGCAGACTCTAGCAGCAATCGGCGAGGATTTATTTGCAATAGCTCAAGATCAACCTTTTCGATTCCCTTCCACCTTTACCTTTGTTTTGAGGGCATTTTCTACCCTTGAAGGTATAGGCTACATGCTCGACCCAGATTTTTCGTTCGTGAAGATCGCTGCACCATATGCACAGGAGCTTTTAGAGTTAAAAAAGGAGCGAAGCGGAACACAACTTGTGCAGGAGATAAGAAAACAAGCCAATGATGCAAGAACATCCACCATTTCCATGCCATACAGAGTCCAAAAAATAGAGGAATTCGTACAACAGCTCGAGTCAGGGGACTTAAAGCTTCGAGTCCGAGTGCTAGAGTCTGAAAGAGCAGCAAGGAAAGCAACAGTACTTCAGATGACAACGATGTACACCGTGATGGGCGGTACCCTTTTGAACCTCGGTATCACCCTGATCTCTCAAGGCAACCAAGCTGTTGCAGGTGGATCGTTCGTCGGAGCAGGAGTTTTTATGGTGCTCGTTGTTCGTGAAACTCTGCTACACAATCCATACAAGAAGCATGTAAGTATAGAAGTCTTTTTTCTCTATTTATTTGCTAGAGCAAAAGCTTATTTGGATGACAGAAAAACAAGGCAGTTTAGAGAAGACGCTGCTGGTGTATACCTGCTGGAAGTAGCAGACACCGTTAAACGTCCTTCGAAGCTGCGTAGACTAAGGGCCCCGCTTTCCACTTCTATAATATCCCATTACCCAACTCCTTCTCTTGTCCTACTCCCACGCCCCCTCTTCTCTCTCAATCAACCATACACTCCTTTACCTTCAAAATCCATCATCGCCACCATCTTCTCGTCGAACCCCACTCATGGCGGTAAGAAATCCACTCACACCCAAGTTTCTTTCATCGCTAATCTCTTGCTTTCAGTTTCTCCTCTGTCTTTACCATGCTCTACTGAAGTTTTTCTAGATGTTTCTGATATTCGATTGGGCAATTCTCGATTGTTTCGAGATTGTCTCGCCATTGCGTTGGCTCTTCATATCATGAGGTTGGGTAGCTGCAAGGAAAAAGGCAGTAGCAGTCCGTTGCCGAAATTCGGCGAATGGGATGTGAACGACCCTGCATCTGCTGAGGGATTCACAGTAATCTTCAATAAAGCCAGGAATGAGAAAAAGGCTGGTGGCATGCCTGACTCTCCAGCAAAGGATGACCCCACATACAAGAATGGTTCTGTTCTTGGAAAGCCTCAACCTGTAAAAAAAATGGTTTTGCTGCTTGCAAGCTGCAGAATCGTGAGGCTTTTCGGATCGATGAACGGAGTTCAGCAGAATCAACACACTGACTTTTATCTCTTGAAGATTGAAGCTGCTGCATTTAGAATGTGTTTATGGATAATGCTGAACTCCTTGGGGTTTGGGGATGAAGATGATTAA 3726 44.79 MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTMGRQGEKDGSGGGGPSGSGASGGVNSSTGGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYGSSGGYHHMGIGGGKEGNSGSRWNLLKVLSNFIASLMDDIFRKLIIIFPPLISGLSLVIVKVVEKLLYGHYTWMAATLASHSCYRREGSLNEGKGKQGYDLCFSRSISLHTFNKIERSIWSPPNSQHFRVRNEMQQNTSLPRLRANGRAVKMVPINEVVKKRAVSANKVENINGKKQVINGANVVKRSPSPPLVKRTNVTDSKKLPPIEGLKVLPSDEGFSWANENYNSFQRSIDVWSFIISLRVRVFLENTKWTYAGGFEDKQKKRRKKTASWLRERVLQLGPTFIKLGQLSSTRSDLFPREYVDELAKLQDKVPAFSPKKARGFIESELGAPIDTLFKEFEDRPIAAASLGQVHRAILHNGERVIVKVQRPGLKKLFDIDLRNLKLIAEYFQRSETFGGASRDWIGIYEECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTALKVLTLEYVPGVKINQLHVLDSRGFNRSRISSHAIEAYLIQILKTGFFHADPHPGNLAIDVDEAIIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVMQRLIDLEALQPTGDMSSVRRSIQFFLDNQLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVLRAFSTLEGIGYMLDPDFSFVKIAAPYAQELLELKKERSGTQLVQEIRKQANDARTSTISMPYRVQKIEEFVQQLESGDLKLRVRVLESERAARKATVLQMTTMYTVMGGTLLNLGITLISQGNQAVAGGSFVGAGVFMVLVVRETLLHNPYKKHVSIEVFFLYLFARAKAYLDDRKTRQFREDAAGVYLLEVADTVKRPSKLRRLRAPLSTSIISHYPTPSLVLLPRPLFSLNQPYTPLPSKSIIATIFSSNPTHGGKKSTHTQVSFIANLLLSVSPLSLPCSTEVFLDVSDIRLGNSRLFRDCLAIALALHIMRLGSCKEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVKKMVLLLASCRIVRLFGSMNGVQQNQHTDFYLLKIEAAAFRMCLWIMLNSLGFGDEDD 1241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3345325 3357817 + CmoCh20G006820.1 Cmo20g00682 404999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00682 1241 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 388 935 - -
Cmo20g00682 1241 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cmo20g00682 1241 PANTHER PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 7, CHLOROPLASTIC 388 935 - -
Cmo20g00682 1241 SUPERFAMILY Protein kinase-like (PK-like) 491 826 IPR011009 -
Cmo20g00682 1241 Gene3D Histone, subunit A 15 132 IPR009072 GO:0046982
Cmo20g00682 1241 SUPERFAMILY Histone-fold 24 128 IPR009072 GO:0046982
Cmo20g00682 1241 CDD ABC1_ADCK3-like 489 736 - -
Cmo20g00682 1241 MobiDBLite consensus disorder prediction 1 24 - -
Cmo20g00682 1241 Pfam ABC1 atypical kinase-like domain 489 734 IPR004147 -
Cmo20g00682 1241 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cmo20g00682 1241 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cmo20g00682 1241 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cmo20g00682 1241 MobiDBLite consensus disorder prediction 115 149 - -
Cmo20g00682 1241 MobiDBLite consensus disorder prediction 1155 1175 - -
Cmo20g00682 1241 MobiDBLite consensus disorder prediction 1 21 - -
Cmo20g00682 1241 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 1124 1157 IPR008700 -
Cmo20g00682 1241 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00240 Cmo-Chr2:1129964 Cmo20g00682 Cmo-Chr20:3345325 7.11E-31 dispersed
Cmo03g00808 Cmo-Chr3:6541066 Cmo20g00682 Cmo-Chr20:3345325 9.73E-103 dispersed
Cmo04g00271 Cmo-Chr4:1368977 Cmo20g00682 Cmo-Chr20:3345325 6.33E-52 dispersed
Cmo04g00847 Cmo-Chr4:4228134 Cmo20g00682 Cmo-Chr20:3345325 1.23E-55 dispersed
Cmo04g01312 Cmo-Chr4:6677894 Cmo20g00682 Cmo-Chr20:3345325 1.98E-48 dispersed
Cmo06g00346 Cmo-Chr6:1673581 Cmo20g00682 Cmo-Chr20:3345325 2.46E-54 dispersed
Cmo09g01019 Cmo-Chr9:5434190 Cmo20g00682 Cmo-Chr20:3345325 2.53E-23 dispersed
Cmo14g00178 Cmo-Chr14:811623 Cmo20g00682 Cmo-Chr20:3345325 6.34E-54 dispersed
Cmo16g00726 Cmo-Chr16:3621082 Cmo20g00682 Cmo-Chr20:3345325 7.01E-57 dispersed
Cmo16g00996 Cmo-Chr16:6867739 Cmo20g00682 Cmo-Chr20:3345325 1.06E-19 dispersed
Cmo16g01006 Cmo-Chr16:6914249 Cmo20g00682 Cmo-Chr20:3345325 6.99E-54 dispersed
Cmo18g00186 Cmo-Chr18:1273541 Cmo20g00682 Cmo-Chr20:3345325 4.18E-15 dispersed
Cmo18g00562 Cmo-Chr18:4613008 Cmo20g00682 Cmo-Chr20:3345325 4.52E-06 dispersed
Cmo02g00239 Cmo-Chr2:1123519 Cmo20g00682 Cmo-Chr20:3345325 0 transposed
Cmo08g01004 Cmo-Chr8:6520433 Cmo20g00682 Cmo-Chr20:3345325 1.80E-61 transposed
Cmo12g00328 Cmo-Chr12:2043155 Cmo20g00682 Cmo-Chr20:3345325 4.01E-67 transposed
Cmo17g01087 Cmo-Chr17:8978176 Cmo20g00682 Cmo-Chr20:3345325 6.28E-47 transposed
Cmo02g00237 Cmo-Chr2:1117825 Cmo20g00682 Cmo-Chr20:3345325 4.28E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11755 PF03109 ABC1 3.40E-37 CL0016 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00682 - K13457 cmax:111483688 1325.46