Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00685 ATGGAGGACAATCGAGGTATCAGCAGCAGCAAGCCAACCGAAAAATGGATGGCATTTGACCGAGAATCAAACACAACAAACACTCCTGGAAATGAAGCAAAAGTAGACAGAAAAAGCTGGCAAGCTTCTGCCACAGGGGCAATATCAACAGAAGCAATCATAGCAGAGAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACGGACGTGGAAGAGGGCAGTTTCAAGGCCGTTGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAAGATTATCAGAGAAAATCAGTGTCACAGAAAGAACATCAAGCTTTAGCAATGAAACTTCTGGAGTTTTTCCAAGGGCATCACAAGAGTTGAAGGATGCTTTGTCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGAGTGTCCCATCGTGTATGCGAGCAGTGGATTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAAGAACTGTCGTTTTCTTCAGGGACCAGAAACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAAAATGGCAAAAGCTACTGTGGAAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTGCTGACAGTCACGCCTATCAAGGACGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGATAAAGCATTACGACCGAACGGATTGCCAAAGTCCTTAATCCGCTATGATGCTCGCCAGAAGGAAAGGGCAATGGGTTCGATCACAGAGGTTGTTCAGACTGTGAAGAATCCCCGATCTCATTATCGAGCAATGAGCCATGACACCACCAGAAAGAAAGAAGATTTGGAGAAGTTCAATCTTGACTATGTTCTTCCGAAGTCCATTCTAGCTGCAAATGCTACACCATTAAGACAGACTCCTCAACAGAACCTGAGAGATGATGGTTTAGGCAAGAAACCTAAGTTATCAAGTCGGGTTTCTTTCACGGGGCTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGCAATAGCCTTTGAACCAGAAATTTTGATGACCGATGAAATTGAACGGACTGATAGTTGGGACCGTTCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAATTTTGTCATTACGGATCCAAGGCTTCCGGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGACACTGTCACAAGGATAAGGGATGCAATTAGGGAACAAAGAGAAGTGACTGTTCAGTTGATCAACTATACCAAGACTGGTAAGAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGAGATGAAACGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCATGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGTTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGACTTGTGGTCAATTCATTCTCAACCAGTCTTCCCCAGGCCTCACAAGAAGCACAGTTCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAGAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGTATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACTGCTACACATGTTTGTTTGATAACCGACTTTTGTGCTGGTGGGGAGTTATTTGCATTACTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCTGAGGTCGTCATTGGCTTGGAGTATCTTCACTGTCTAGGAATCATTTATCGAGACCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACACTTGCTGACTTCGATTTATCACTTGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCACGGTAGAAGGAGATCCCGAAGTCAACCACCGCCAGTATTTGTTGCAGAGCCAATCACGCAATCAAATTCTTTCGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGTCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACCTTTCCCAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTTCAAAGAGACCCCACGAGACGTTTGGGATCGAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTCTTCCAATCAATCAACTGGCCGCTGATCCGGTGTGCGGTCCCGCCACCATTAGAATCGCCACTTCATCTTACTGGGAAAGGTGAAAGAGACAAGAACGTAAACTGGGAAGATGATGGGGTGCTTAGCTCAGTGGATATGGATTTCTTCTGA 2769 44.1 MEDNRGISSSKPTEKWMAFDRESNTTNTPGNEAKVDRKSWQASATGAISTEAIIAERAAEWGLVVETDVEEGSFKAVGRASGEGGGSKRLSEKISVTERTSSFSNETSGVFPRASQELKDALSSLEQTFVVSDATKPECPIVYASSGFFGMTGYASEEVIGKNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKERAMGSITEVVQTVKNPRSHYRAMSHDTTRKKEDLEKFNLDYVLPKSILAANATPLRQTPQQNLRDDGLGKKPKLSSRVSFTGLKGKSLSSSRKLEAIAFEPEILMTDEIERTDSWDRSERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVTRIRDAIREQREVTVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLVKATAENVDEAVRELPDANLRPEDLWSIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETATHVCLITDFCAGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPTRRLGSSTGANEIKQHPFFQSINWPLIRCAVPPPLESPLHLTGKGERDKNVNWEDDGVLSSVDMDFF 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3370425 3381530 - CmoCh20G006850.1 Cmo20g00685 405002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00685 922 MobiDBLite consensus disorder prediction 1 42 - -
Cmo20g00685 922 Pfam Protein kinase domain 589 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00685 922 TIGRFAM sensory_box: PAS domain S-box protein 411 501 IPR000014 -
Cmo20g00685 922 TIGRFAM sensory_box: PAS domain S-box protein 140 231 IPR000014 -
Cmo20g00685 922 SUPERFAMILY PYP-like sensor domain (PAS domain) 402 501 IPR035965 -
Cmo20g00685 922 Gene3D PAS domain 128 299 - -
Cmo20g00685 922 CDD PAS 401 501 IPR000014 -
Cmo20g00685 922 CDD PAS 141 230 IPR000014 -
Cmo20g00685 922 ProSiteProfiles Protein kinase domain profile. 587 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00685 922 ProSiteProfiles PAC domain profile. 188 242 IPR000700 -
Cmo20g00685 922 MobiDBLite consensus disorder prediction 19 34 - -
Cmo20g00685 922 Gene3D Phosphorylase Kinase; domain 1 586 670 - -
Cmo20g00685 922 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 227 IPR035965 -
Cmo20g00685 922 SUPERFAMILY Protein kinase-like (PK-like) 563 894 IPR011009 -
Cmo20g00685 922 ProSiteProfiles PAS repeat profile. 386 459 IPR000014 -
Cmo20g00685 922 ProSiteProfiles PAS repeat profile. 114 187 IPR000014 -
Cmo20g00685 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Cmo20g00685 922 SMART pac_2 463 505 IPR001610 -
Cmo20g00685 922 SMART pac_2 191 233 IPR001610 -
Cmo20g00685 922 ProSiteProfiles PAC domain profile. 460 514 IPR000700 -
Cmo20g00685 922 SMART serkin_6 587 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00685 922 CDD STKc_phototropin_like 585 893 - -
Cmo20g00685 922 ProSitePatterns Protein kinases ATP-binding region signature. 593 616 IPR017441 GO:0005524
Cmo20g00685 922 Pfam PAS domain 135 231 IPR000014 -
Cmo20g00685 922 Pfam PAS domain 409 501 IPR000014 -
Cmo20g00685 922 Gene3D Transferase(Phosphotransferase) domain 1 671 891 - -
Cmo20g00685 922 PANTHER BNAA02G07840D PROTEIN 83 920 - -
Cmo20g00685 922 PANTHER FLIPPASE KINASE 1-RELATED 83 920 - -
Cmo20g00685 922 Gene3D PAS domain 375 539 - -
Cmo20g00685 922 SMART pas_2 116 185 IPR000014 -
Cmo20g00685 922 SMART pas_2 388 457 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00853 Cmo-Chr2:5187055 Cmo20g00685 Cmo-Chr20:3370425 0 dispersed
Cmo19g00847 Cmo-Chr19:8226861 Cmo20g00685 Cmo-Chr20:3370425 1.67E-30 dispersed
Cmo20g00487 Cmo-Chr20:2272338 Cmo20g00685 Cmo-Chr20:3370425 0 dispersed
Cmo20g00685 Cmo-Chr20:3370425 Cmo11g01662 Cmo-Chr11:11792207 2.95E-112 dispersed
Cmo04g01708 Cmo-Chr4:8650463 Cmo20g00685 Cmo-Chr20:3370425 3.95E-25 transposed
Cmo02g00304 Cmo-Chr2:1529636 Cmo20g00685 Cmo-Chr20:3370425 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75162 PF00069 Pkinase 1.30E-61 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00685 K20715 - csv:101215355 1684.85