Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00685 | ATGGAGGACAATCGAGGTATCAGCAGCAGCAAGCCAACCGAAAAATGGATGGCATTTGACCGAGAATCAAACACAACAAACACTCCTGGAAATGAAGCAAAAGTAGACAGAAAAAGCTGGCAAGCTTCTGCCACAGGGGCAATATCAACAGAAGCAATCATAGCAGAGAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACGGACGTGGAAGAGGGCAGTTTCAAGGCCGTTGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAAGATTATCAGAGAAAATCAGTGTCACAGAAAGAACATCAAGCTTTAGCAATGAAACTTCTGGAGTTTTTCCAAGGGCATCACAAGAGTTGAAGGATGCTTTGTCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGAGTGTCCCATCGTGTATGCGAGCAGTGGATTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAAGAACTGTCGTTTTCTTCAGGGACCAGAAACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAAAATGGCAAAAGCTACTGTGGAAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTGCTGACAGTCACGCCTATCAAGGACGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGATAAAGCATTACGACCGAACGGATTGCCAAAGTCCTTAATCCGCTATGATGCTCGCCAGAAGGAAAGGGCAATGGGTTCGATCACAGAGGTTGTTCAGACTGTGAAGAATCCCCGATCTCATTATCGAGCAATGAGCCATGACACCACCAGAAAGAAAGAAGATTTGGAGAAGTTCAATCTTGACTATGTTCTTCCGAAGTCCATTCTAGCTGCAAATGCTACACCATTAAGACAGACTCCTCAACAGAACCTGAGAGATGATGGTTTAGGCAAGAAACCTAAGTTATCAAGTCGGGTTTCTTTCACGGGGCTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGCAATAGCCTTTGAACCAGAAATTTTGATGACCGATGAAATTGAACGGACTGATAGTTGGGACCGTTCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAATTTTGTCATTACGGATCCAAGGCTTCCGGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGACACTGTCACAAGGATAAGGGATGCAATTAGGGAACAAAGAGAAGTGACTGTTCAGTTGATCAACTATACCAAGACTGGTAAGAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGAGATGAAACGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCATGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGTTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGACTTGTGGTCAATTCATTCTCAACCAGTCTTCCCCAGGCCTCACAAGAAGCACAGTTCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAGAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGTATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACTGCTACACATGTTTGTTTGATAACCGACTTTTGTGCTGGTGGGGAGTTATTTGCATTACTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCTGAGGTCGTCATTGGCTTGGAGTATCTTCACTGTCTAGGAATCATTTATCGAGACCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACACTTGCTGACTTCGATTTATCACTTGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCACGGTAGAAGGAGATCCCGAAGTCAACCACCGCCAGTATTTGTTGCAGAGCCAATCACGCAATCAAATTCTTTCGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGTCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACCTTTCCCAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTTCAAAGAGACCCCACGAGACGTTTGGGATCGAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTCTTCCAATCAATCAACTGGCCGCTGATCCGGTGTGCGGTCCCGCCACCATTAGAATCGCCACTTCATCTTACTGGGAAAGGTGAAAGAGACAAGAACGTAAACTGGGAAGATGATGGGGTGCTTAGCTCAGTGGATATGGATTTCTTCTGA | 2769 | 44.1 | MEDNRGISSSKPTEKWMAFDRESNTTNTPGNEAKVDRKSWQASATGAISTEAIIAERAAEWGLVVETDVEEGSFKAVGRASGEGGGSKRLSEKISVTERTSSFSNETSGVFPRASQELKDALSSLEQTFVVSDATKPECPIVYASSGFFGMTGYASEEVIGKNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKERAMGSITEVVQTVKNPRSHYRAMSHDTTRKKEDLEKFNLDYVLPKSILAANATPLRQTPQQNLRDDGLGKKPKLSSRVSFTGLKGKSLSSSRKLEAIAFEPEILMTDEIERTDSWDRSERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVTRIRDAIREQREVTVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLVKATAENVDEAVRELPDANLRPEDLWSIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETATHVCLITDFCAGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPTRRLGSSTGANEIKQHPFFQSINWPLIRCAVPPPLESPLHLTGKGERDKNVNWEDDGVLSSVDMDFF | 922 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3370425 | 3381530 | - | CmoCh20G006850.1 | Cmo20g00685 | 405002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00685 | 922 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cmo20g00685 | 922 | Pfam | Protein kinase domain | 589 | 874 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo20g00685 | 922 | TIGRFAM | sensory_box: PAS domain S-box protein | 411 | 501 | IPR000014 | - | |
Cmo20g00685 | 922 | TIGRFAM | sensory_box: PAS domain S-box protein | 140 | 231 | IPR000014 | - | |
Cmo20g00685 | 922 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 402 | 501 | IPR035965 | - | |
Cmo20g00685 | 922 | Gene3D | PAS domain | 128 | 299 | - | - | |
Cmo20g00685 | 922 | CDD | PAS | 401 | 501 | IPR000014 | - | |
Cmo20g00685 | 922 | CDD | PAS | 141 | 230 | IPR000014 | - | |
Cmo20g00685 | 922 | ProSiteProfiles | Protein kinase domain profile. | 587 | 874 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo20g00685 | 922 | ProSiteProfiles | PAC domain profile. | 188 | 242 | IPR000700 | - | |
Cmo20g00685 | 922 | MobiDBLite | consensus disorder prediction | 19 | 34 | - | - | |
Cmo20g00685 | 922 | Gene3D | Phosphorylase Kinase; domain 1 | 586 | 670 | - | - | |
Cmo20g00685 | 922 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 135 | 227 | IPR035965 | - | |
Cmo20g00685 | 922 | SUPERFAMILY | Protein kinase-like (PK-like) | 563 | 894 | IPR011009 | - | |
Cmo20g00685 | 922 | ProSiteProfiles | PAS repeat profile. | 386 | 459 | IPR000014 | - | |
Cmo20g00685 | 922 | ProSiteProfiles | PAS repeat profile. | 114 | 187 | IPR000014 | - | |
Cmo20g00685 | 922 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 708 | 720 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo20g00685 | 922 | SMART | pac_2 | 463 | 505 | IPR001610 | - | |
Cmo20g00685 | 922 | SMART | pac_2 | 191 | 233 | IPR001610 | - | |
Cmo20g00685 | 922 | ProSiteProfiles | PAC domain profile. | 460 | 514 | IPR000700 | - | |
Cmo20g00685 | 922 | SMART | serkin_6 | 587 | 874 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo20g00685 | 922 | CDD | STKc_phototropin_like | 585 | 893 | - | - | |
Cmo20g00685 | 922 | ProSitePatterns | Protein kinases ATP-binding region signature. | 593 | 616 | IPR017441 | GO:0005524 | |
Cmo20g00685 | 922 | Pfam | PAS domain | 135 | 231 | IPR000014 | - | |
Cmo20g00685 | 922 | Pfam | PAS domain | 409 | 501 | IPR000014 | - | |
Cmo20g00685 | 922 | Gene3D | Transferase(Phosphotransferase) domain 1 | 671 | 891 | - | - | |
Cmo20g00685 | 922 | PANTHER | BNAA02G07840D PROTEIN | 83 | 920 | - | - | |
Cmo20g00685 | 922 | PANTHER | FLIPPASE KINASE 1-RELATED | 83 | 920 | - | - | |
Cmo20g00685 | 922 | Gene3D | PAS domain | 375 | 539 | - | - | |
Cmo20g00685 | 922 | SMART | pas_2 | 116 | 185 | IPR000014 | - | |
Cmo20g00685 | 922 | SMART | pas_2 | 388 | 457 | IPR000014 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00853 | Cmo-Chr2:5187055 | Cmo20g00685 | Cmo-Chr20:3370425 | 0 | dispersed | |
Cmo19g00847 | Cmo-Chr19:8226861 | Cmo20g00685 | Cmo-Chr20:3370425 | 1.67E-30 | dispersed | |
Cmo20g00487 | Cmo-Chr20:2272338 | Cmo20g00685 | Cmo-Chr20:3370425 | 0 | dispersed | |
Cmo20g00685 | Cmo-Chr20:3370425 | Cmo11g01662 | Cmo-Chr11:11792207 | 2.95E-112 | dispersed | |
Cmo04g01708 | Cmo-Chr4:8650463 | Cmo20g00685 | Cmo-Chr20:3370425 | 3.95E-25 | transposed | |
Cmo02g00304 | Cmo-Chr2:1529636 | Cmo20g00685 | Cmo-Chr20:3370425 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75162 | PF00069 | Pkinase | 1.30E-61 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00685 | K20715 | - | csv:101215355 | 1684.85 |