Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00687 ATGGAGACAGGCGGCAATTCATTATCATCTGGGCCTGACGGCGTGAAGAGGAAGGTCAGCTATTTCTACGACCCTGAGGTCGGGAATTACTATTATGGGCAGGGGCACCCAATGAAGCCACACCGAATCCGAATGACGCATGCCCTTCTCGCCCATTATGGCTTACTCCAGCATATGCAGGTTTTCAAGCCTCTTCCTGCGAGAGATAAAGTCCTCTGCAGATTTCACGCTGATGATTATGTGGCGTTTCTTAAAAACATTACCCCTGAAACGCAGCAAGACCAGTTGAGACAGCTTAAGCGCTTCAATGTTGGTGAGGACTGTCCTGTCTTCGATGGCCTTTATTCTTTCTGTCAAACTTATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTCAATTGGTCTGGTGGTCTACACCATGCGAAGAAGTGCGAAGCTTCTGGGTTCTGTTATGTCAATGATATTGTTCTGGCGATACTGGAGCTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTTGAAGAGGCTTTTTATACAACCGACAGAGTCATGACTGTATCGTTCCACAAATTTGGAGATTATTTTCCCGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTACTCACTTAATGTTCCTTTGGATGATGGAATTGATGATGAGAGCTATCATTACTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAGACCTGGTGCTGTTGTTCTCCAATGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGGAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTACACCATCCGTAACGTTGCTCGCTGCTGGTGCTACGAGGTACACATTTTGCTTTCAAAGAATGATTTTTGTATGATCAAGTGTTGGTTCCTTCTTGTATCTTTTGCTACAAATTCTTTCTTGTCTCTATATCATTTTTCTGACCTGCTGTTTTACATCGAACTGTCATGTGGAGTGCAGACAGGAGTTGCTCTTGGGATGGAGGTTGATGACAAAATGCCACAGCATGAATATTATGAGTATTTTGGTCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCTTATGCTGGAAGAAATACAGGGAAAGCTACTTGAATACCTTGCACGACTTCAGCATGCGCCCAGTGTTCCATTTCAAGAAAGGCCTCCTGATACTGAACTCCCTGAGGCGGATGAAGACCAGGAGGATAAGGATGAGAGATGGGATCCAGACTCAGATATGGAAGTTGACGAAGAGAGAAAACCCATCCCAAGCAGAGTTAAAAGAGAAACGGTTGAGACTGAAATCAAAGAGCCGGAAGTTAATCCCGAGAGTACTAGAGGTTTAGAAAAAGCAGCTGCGGAGGCTACAAGTGCAAAGGTGAAAAATCTCCAGAAAATGGAAGCCATGAAATATTCTCTTTACAAGAAACCATCACTTTTAATTGAAATGATTTGTCTTAGAAGGTTCCCCCGGAGTTATTCTTCTTCTCTTGCTTTAGATATAGGTTCTCTCAAACTTGAAGAGTCGGGCGTAAAACTCGAAGAGCCCAGCAAGCAGAATGACCAAATGTTCCCCTACTTTGAACTATAA 1746 43.01 METGGNSLSSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVFKPLPARDKVLCRFHADDYVAFLKNITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHKVCDIAVNWSGGLHHAKKCEASGFCYVNDIVLAILELLKHYERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGIDDESYHYLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHGECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYEVHILLSKNDFCMIKCWFLLVSFATNSFLSLYHFSDLLFYIELSCGVQTGVALGMEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNTHLMLEEIQGKLLEYLARLQHAPSVPFQERPPDTELPEADEDQEDKDERWDPDSDMEVDEERKPIPSRVKRETVETEIKEPEVNPESTRGLEKAAAEATSAKVKNLQKMEAMKYSLYKKPSLLIEMICLRRFPRSYSSSLALDIGSLKLEESGVKLEEPSKQNDQMFPYFEL 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3387479 3392714 + CmoCh20G006870.1 Cmo20g00687 405004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00687 581 Pfam Histone deacetylase domain 36 326 IPR023801 -
Cmo20g00687 581 PANTHER HISTONE DEACETYLASE 19 3 328 - -
Cmo20g00687 581 SUPERFAMILY Arginase/deacetylase 18 339 IPR023696 -
Cmo20g00687 581 PANTHER HISTONE DEACETYLASE 19 369 520 - -
Cmo20g00687 581 MobiDBLite consensus disorder prediction 465 496 - -
Cmo20g00687 581 MobiDBLite consensus disorder prediction 444 464 - -
Cmo20g00687 581 Gene3D Histone deacetylase domain 15 435 IPR037138 -
Cmo20g00687 581 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PANTHER HISTONE DEACETYLASE 3 328 - -
Cmo20g00687 581 PANTHER HISTONE DEACETYLASE 369 520 - -
Cmo20g00687 581 MobiDBLite consensus disorder prediction 433 499 - -
Cmo20g00687 581 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Cmo20g00687 581 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Cmo20g00687 581 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Cmo20g00687 581 PIRSF HDAC_I_euk 366 521 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PIRSF HDAC_I_euk 3 337 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 CDD HDAC_classI 22 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00687 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101214717 947.577
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01384 Cmo20g00687 CCT
Cmo02g00305 Cmo20g00687 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01380 Cmo-Chr2:8190259 Cmo20g00687 Cmo-Chr20:3387479 2.66E-158 dispersed
Cmo10g00105 Cmo-Chr10:456335 Cmo20g00687 Cmo-Chr20:3387479 0 dispersed
Cmo11g00076 Cmo-Chr11:355753 Cmo20g00687 Cmo-Chr20:3387479 0 dispersed
Cmo13g00366 Cmo-Chr13:4695945 Cmo20g00687 Cmo-Chr20:3387479 8.88E-26 dispersed
Cmo20g00201 Cmo-Chr20:984159 Cmo20g00687 Cmo-Chr20:3387479 4.71E-162 dispersed
Cmo20g00687 Cmo-Chr20:3387479 Cmo10g00322 Cmo-Chr10:1445053 8.97E-27 dispersed
Cmo02g00305 Cmo-Chr2:1544517 Cmo20g00687 Cmo-Chr20:3387479 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00687 Cmo_Chr20 FPKM 1.190132 0.97531 13.938161 12.757287 2.96202 3.311232 2.829386 17.435125 15.361981 16.418911