Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00692 ATGGATGGACTTAGGAGTAACGACAACAAACAAAACATTGATAGGCATTCCCGAGCTGAGATGGGATCGTTCAGCGAGAGAACCATACTTGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGCATAGTTCGTCATTGGGTGGTGGTTCGCAGAAACTTTGTTATGGCAACATGAAGAACAGGGTATTTCACAGCCTTAAGGTTGTCGTCTTCTCTGCTAAGATCAACTTTCTCATGCCTTTTGGGCCATTAGCAATATTAGTCAGCAGTTTGACTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAACGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTACGAAGAGGAATGATACGTGTCGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAACATGTTATTAGTACTTGGATGTGCCTTCTTTGCCGGTGGAATTGTGGTTTCTAAGAGAGAGCAGGTCTTCAGTAAGGCATCTGCTACTGTAAATTCTGGATTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTTCTTCGTTCCACACATACAGAGTTGCACTCTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGCGATAAGAACTTATATCTCCCCGTTACTGAGGAGGATACTGAAGAGAGTTTGGATGACGAAGACGCTCCCGAGATTTCTATGTGGGAATCCATTATTTGGCTGTTTATCTTGACCATTTGGATCTCCGTCCTCTCAGAATACTTGGTTAATGCAATAGAGGGGGCGTCGGTTGCCATGAACATACCGGTGGCATTCATTAGCGTTATCCTACTACCCATTGTTGGGAATGCGGCAGAGCATGCAGGGGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCGTCCACACAGATATCGATGTTCGGGATCCCTTTCTGTGTGGTCATTGGTTGGATCATGGGATGCCCTATGGACTTGAATTTTCAACTTTTTGAAACTGCCACGCTTTTCATCACGGTCATCGTTGTGGCCTTCATGTTGCAGGATGGAACTTCCAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATGTTGATCCAGCGTCAGTTGGTAAGCCTTCACTCCCTTTGCTGCAGTTGGAAACTGGAAACAAAACGAAACTTCTCTCTGGTGGTTCTGAGTATTTCGGAGTAGCTTTGGGGTTTTGCTGTTTCTCTACTCGGAGCTTAGATACCAACGTTGAAATGTCGAGTCGGGCTGATATGGGAAGGGATCGGTATCGGAAGGATTATACGTCGAGATATGATGAGAAGTCGCAGTCTGGGCATAGCAATAGCAGTAATCCTCCGTCGAGACATCTCTGGGTCGGAAATTTGTCTCATGCTATAGTGGAGCGCGATCTAACTCGCTACTTTTCACAGTTTGGTGAGCTCGATAGAATTGCTTTCCAGCCCAATCGGAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCAATGGAAGCCATGAGAGAGCTTCAAGGTTTTGCTATTGGAGGGAATCCCATTAAAATTGAGTTTGCCAAGGCGGATAAGCCATCTGCATCATCACGCGATGAAGACTATTCTCAACACCGAGAGGAAAAATCTTATGGAGCGAAGGGTTCCTTCTCTCAGGGACGACATGCTAGTCCTGACTATTCTCAACACCGACATGCTAGTCCTGAAAAGTCCAAAATAAGCGATAAAAATACAGAGCCCAGTGAAGTGTTATGGATAGGATTTCCGGCTTTAATAAAAGTGGATGAAACGATATTAAGGAAGGCCTTTTCACCGTTTGGGGAAATTGAGAAGATTACAACATTCCCTGGTCGAACATATGCTTTTGTTCGTTTTCGGGTTGTGTCATCAGCTTGGAGGGCTAAAGAGACTCTACAGGGGAAGCTATTTGGAAATCCCCGAGTACACATTTGTTTTGCAAGAAGTGATTCTGGTTCATCAAACGGTGGAAGGAGCTCATCGAATGCACCTCTTTCTCCAAGATCTCCTCACCTTTTCTCAAATTTTGATTCTGGAGAATTTGATTCCCGTGGTCTTAATAGGAAAAGTAATTTATGGACTAGTGAGAACAATGCGTTTGAAATGAAGAGGTCTGGAGAATTCTCATCAAAATTAGGTCCATCCGAAGATAGATATGAACATGGTAGTCCAACAAAAGAGAGAGGTCCTCATTTAAATAACTTTCCTCAAAGATTTTCTCAACCTCCATTTTATGAAGATCCATGGGACTTACCAGAGGATACGAACTTGTATCAAGGGTCCAAGAAATTGAAGATTGGATCCTTTCCCCAGGATAAAGAGCTCCCTGAGTACCCATTATCTGATTTGGAACAAGATAAACGTATCATTCGAAAGTCATACACTGATTTTTCCTCCTCAGAAACATTTGATCATACGATGAAGTCTGGGCCACCTCTGGGGTATAAACAGACTCCTGATCGGCCTATAACAATGTCAGTCCCTTATGATCGGCCTATAACAATGTCAGTCCCGTATGATCGGCCTATAACAAAGTCAGTCCCTTATGAAGAAAAGAGTGAACACTGGAGGGAACCATATGATAATTTTCAGGTTCCTGAGTCTCTGCCACCCAATGCTGTTGCAAGGAAAAGGTTCTCTCCTGATTCAGAACGGTCATCTATAAAAGAGTGGAAATGGGAGGGAACTATTGCAAAGGGAGGAACACCTGTTTGTCGTGCTCGCTGCTTTCCTGTGGGAGAGGTTCTGGATATGTTATTGCCAGAGTTCTTAGATTGTACTGCAAAAACTGGTCTAGACATGCTCTCAAAGCATTACTATGAAGCAGCCAGTGCTTGGGTTGTTTTCTTTGTACCTGAAAGCGATGCTGACATCGTATTCTACAATGAATTCATGAACTATCTTGGTGAAAAGCAACGAGCAGCAGTTGCCAAGTTGGATGACAGAACCACCATGTTTCTTGTTCCGCCATCCGAGTTTTCAGAAAAAGTGCTCAAGGTACCAGGTAAATTGAGCATTTCAGGAGTTGTTCTGAGGTTAGAGCGTGCTGGTACAAGCGCAAGGCCTCCTCCATATCAAAACGAAACGAAGGACACAAGCTTGTTACCTTTACATAGTGAAACGTTATATACCAACTTACAGACGTCTCCAGCTGTTTTTGCCCCAGTATCATCTTTATCCTATCTCAGTAAAGCAGGAATCAATCATACATCATTACCTAGGAATGTCGCTGCTTCAGCGTCGCCCGTGTTATTTCATGGCTCAGGGCAGTCTGTTGGAAGTTTGTCTGATCCATATATTGAGAACAGGCATGAGTATCCAATTCAACAGCAGCAAAATGCCAATGGACCGAACCCGACTCACCATCTACAAAACTCGATGTTCGATACTCGAAATACCCCATCACAAGCTTTGAACAATTCAATGGATCCTGTTATTCAGGAACGTCATTTAATCATTCCAAGGGAAATTCAGGAAACAGGCTCCAGTAATTATACCGTTGGAATTTCTTCTGTTACATCTGGAAATGCTTTATTATCTACTCAACATGAAATAAACCCGGCAGCCTCTTTGGCTACAACTCTTTCCTCCCTACCGCCAGACCAACTGGCACAATTAGCATCATCTCTGCTTGGGCATCAAAGGCAACCGGGGAGTATGCCAAATGCAACCATGGCTGAAGAATTGAGGCATCGGAACGAATCGGTTGTGCCATTGGGAAGGTCCCAAAATGGCTCTTTCCAGACTAATCTGATGAACTCTGAGCCTCAGACATCTCAAATTGTTCAAGTTCAACAGATGCAGCAGCATGTACAACAACACCAGATGTCAAACATGCCTGCAGGGCAACTTATGGCACAAAGGGAGCTTCAGATGGAGGCTTTAGGCAATGATCAACAGGTTCAAAACTCCGATGTTCGTGGCGAGGCAGAAGCAGAAGCAGATCCGCAGAAACGCCTGCAAGCTACACTTAAGCTGGCAGCTGCTCTTCTCCAGCAAATTCAACAAGGAAAGGGAAGTTGA 4269 43.66 MDGLRSNDNKQNIDRHSRAEMGSFSERTILEFEDESLVSPVSLNRKNFSIEHSSSLGGGSQKLCYGNMKNRVFHSLKVVVFSAKINFLMPFGPLAILVSSLTGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKASATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVTEEDTEESLDDEDAPEISMWESIIWLFILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHVDPASVGKPSLPLLQLETGNKTKLLSGGSEYFGVALGFCCFSTRSLDTNVEMSSRADMGRDRYRKDYTSRYDEKSQSGHSNSSNPPSRHLWVGNLSHAIVERDLTRYFSQFGELDRIAFQPNRSYAFINFRRDEDAMEAMRELQGFAIGGNPIKIEFAKADKPSASSRDEDYSQHREEKSYGAKGSFSQGRHASPDYSQHRHASPEKSKISDKNTEPSEVLWIGFPALIKVDETILRKAFSPFGEIEKITTFPGRTYAFVRFRVVSSAWRAKETLQGKLFGNPRVHICFARSDSGSSNGGRSSSNAPLSPRSPHLFSNFDSGEFDSRGLNRKSNLWTSENNAFEMKRSGEFSSKLGPSEDRYEHGSPTKERGPHLNNFPQRFSQPPFYEDPWDLPEDTNLYQGSKKLKIGSFPQDKELPEYPLSDLEQDKRIIRKSYTDFSSSETFDHTMKSGPPLGYKQTPDRPITMSVPYDRPITMSVPYDRPITKSVPYEEKSEHWREPYDNFQVPESLPPNAVARKRFSPDSERSSIKEWKWEGTIAKGGTPVCRARCFPVGEVLDMLLPEFLDCTAKTGLDMLSKHYYEAASAWVVFFVPESDADIVFYNEFMNYLGEKQRAAVAKLDDRTTMFLVPPSEFSEKVLKVPGKLSISGVVLRLERAGTSARPPPYQNETKDTSLLPLHSETLYTNLQTSPAVFAPVSSLSYLSKAGINHTSLPRNVAASASPVLFHGSGQSVGSLSDPYIENRHEYPIQQQQNANGPNPTHHLQNSMFDTRNTPSQALNNSMDPVIQERHLIIPREIQETGSSNYTVGISSVTSGNALLSTQHEINPAASLATTLSSLPPDQLAQLASSLLGHQRQPGSMPNATMAEELRHRNESVVPLGRSQNGSFQTNLMNSEPQTSQIVQVQQMQQHVQQHQMSNMPAGQLMAQRELQMEALGNDQQVQNSDVRGEAEAEADPQKRLQATLKLAAALLQQIQQGKGS 1422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3416859 3432801 - CmoCh20G006920.1 Cmo20g00692 405009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 599 652 - -
Cmo20g00692 1422 CDD RRM3_Spen 529 598 - -
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 634 652 - -
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 882 904 - -
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 600 621 - -
Cmo20g00692 1422 Gene3D - 505 607 IPR012677 -
Cmo20g00692 1422 Pfam Sodium/calcium exchanger protein 295 434 IPR004837 GO:0016021|GO:0055085
Cmo20g00692 1422 Pfam Sodium/calcium exchanger protein 107 262 IPR004837 GO:0016021|GO:0055085
Cmo20g00692 1422 TIGRFAM caca2: calcium/proton exchanger 72 437 - -
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 1380 1400 - -
Cmo20g00692 1422 Gene3D - 279 438 IPR044880 -
Cmo20g00692 1422 Gene3D - 135 278 IPR044880 -
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 786 827 - -
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 730 751 - -
Cmo20g00692 1422 Gene3D - 641 745 IPR012677 -
Cmo20g00692 1422 TIGRFAM cax: calcium/proton exchanger 89 437 IPR004798 GO:0006816|GO:0015369
Cmo20g00692 1422 PANTHER VACUOLAR CATION/PROTON EXCHANGER 14 448 - -
Cmo20g00692 1422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 527 599 IPR000504 GO:0003723
Cmo20g00692 1422 SUPERFAMILY RNA-binding domain, RBD 514 608 IPR035979 GO:0003676
Cmo20g00692 1422 SUPERFAMILY RNA-binding domain, RBD 626 741 IPR035979 GO:0003676
Cmo20g00692 1422 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 14 448 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cmo20g00692 1422 SMART rrm1_1 528 595 IPR000504 GO:0003723
Cmo20g00692 1422 SMART rrm1_1 659 727 IPR000504 GO:0003723
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 507 527 - -
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 513 527 - -
Cmo20g00692 1422 MobiDBLite consensus disorder prediction 792 809 - -
Cmo20g00692 1422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 670 723 IPR000504 GO:0003723
Cmo20g00692 1422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 529 593 IPR000504 GO:0003723
Cmo20g00692 1422 Pfam SPOC domain 968 1083 IPR012921 -
Cmo20g00692 1422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 657 731 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00025 Cmo-Chr1:90228 Cmo20g00692 Cmo-Chr20:3416859 9.07E-35 dispersed
Cmo03g00362 Cmo-Chr3:4609713 Cmo20g00692 Cmo-Chr20:3416859 1.51E-113 dispersed
Cmo06g00224 Cmo-Chr6:1201700 Cmo20g00692 Cmo-Chr20:3416859 2.25E-112 dispersed
Cmo06g00695 Cmo-Chr6:3530060 Cmo20g00692 Cmo-Chr20:3416859 1.38E-99 dispersed
Cmo06g00700 Cmo-Chr6:3550261 Cmo20g00692 Cmo-Chr20:3416859 0 dispersed
Cmo07g01105 Cmo-Chr7:5785240 Cmo20g00692 Cmo-Chr20:3416859 2.45E-114 dispersed
Cmo08g00197 Cmo-Chr8:1154353 Cmo20g00692 Cmo-Chr20:3416859 8.30E-07 dispersed
Cmo14g00935 Cmo-Chr14:4962543 Cmo20g00692 Cmo-Chr20:3416859 1.10E-07 dispersed
Cmo14g01257 Cmo-Chr14:10577187 Cmo20g00692 Cmo-Chr20:3416859 9.21E-165 dispersed
Cmo17g00590 Cmo-Chr17:6258442 Cmo20g00692 Cmo-Chr20:3416859 2.71E-06 dispersed
Cmo20g00692 Cmo-Chr20:3416859 Cmo06g00691 Cmo-Chr6:3510263 1.73E-55 dispersed
Cmo16g01015 Cmo-Chr16:7001561 Cmo20g00692 Cmo-Chr20:3416859 1.38E-06 transposed
Cmo02g00312 Cmo-Chr2:1577782 Cmo20g00692 Cmo-Chr20:3416859 0 wgd
Cmo02g00312 Cmo-Chr2:1577782 Cmo20g00692 Cmo-Chr20:3416859 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00692 - - cmos:111448578 1824.29