Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00696 | ATGGGTTTCATGTGTGATTTTTGTGGGGCTCAAAAGTCGATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCACTCGGCCAACGCCTTGTCGAAGCGTCATACAAGAACGCTGTTGTGTGAAAAATGCCATACGCAACCCGCTGTGGCGAGATGTATTGATGAGAGGATTTCTTTGTGTCAAAATTGTGACTGGATGGGCCATGGCACATCTACCTCAGCTTCATCGTCACACAAGAGACAAGCCATTAATTGCTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTTCCCTCTGGAAATGATGCTTGTGAGACAGAGTTGGGATTGATGAGCATTGCGGAGACCGACTTGACGGGCGCTGGTCAAAGAATGCTTGGGTCAACTGAAGCCAGTGACGTTTGCAGCCGGGAAAAGTCAAATGTTTTGGATGGATCATCTTCACTCACTGATTTTCGCTCTAGGCCGCACACTTCAGGCCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACGAAAGTTGCTGGATTCTTCGGTGAAGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAACGGTGGAATTGATAGCCTTTTCGACTCAAGAGGCCTTTCGTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGTTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACTGAACCAATTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTCCCTGGCGAGAGTAGTGTTGGTGAATATCAAGACTGTGGAGCCTCTTCAATGCTTCTAAGGGGAGAGCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTATTGAACGTAACAATGCTGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCAAGTTCGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCAGATGGCAGAAGACGTGTGAAGGGACGGTTTGTGAAGGCAGGAGAGGCCTATGATTGCGACCCACTGAACCGGACTAGAAGCTGCTGA | 1230 | 47.24 | MGFMCDFCGAQKSMVYCRSDAACLCLSCDRNVHSANALSKRHTRTLLCEKCHTQPAVARCIDERISLCQNCDWMGHGTSTSASSSHKRQAINCYSGCPSAAELSSIWSFVLDVPSGNDACETELGLMSIAETDLTGAGQRMLGSTEASDVCSREKSNVLDGSSSLTDFRSRPHTSGQPVELANVALPKFCCPGTKVAGFFGEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDSLFDSRGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQAQSGVSFSGLPGESSVGEYQDCGASSMLLRGEPPWCVPGTESSFPSIERNNAVLRYKEKKKTRKFEKTVRYATRKARADGRRRVKGRFVKAGEAYDCDPLNRTRSC | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3448685 | 3452849 | + | CmoCh20G006960.1 | Cmo20g00696 | 405013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00696 | 409 | ProSiteProfiles | CCT domain profile. | 352 | 394 | IPR010402 | GO:0005515 | |
Cmo20g00696 | 409 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE | 1 | 408 | - | - | |
Cmo20g00696 | 409 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cmo20g00696 | 409 | Pfam | CCT motif | 352 | 394 | IPR010402 | GO:0005515 | |
Cmo20g00696 | 409 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cmo20g00696 | 409 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 1 | 408 | - | - | |
Cmo20g00696 | 409 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00155 | Cmo-Chr2:752523 | Cmo20g00696 | Cmo-Chr20:3448685 | 1.57E-34 | dispersed | |
Cmo14g01166 | Cmo-Chr14:9455451 | Cmo20g00696 | Cmo-Chr20:3448685 | 1.64E-06 | dispersed | |
Cmo14g01479 | Cmo-Chr14:11940455 | Cmo20g00696 | Cmo-Chr20:3448685 | 1.12E-13 | dispersed | |
Cmo20g00608 | Cmo-Chr20:2982028 | Cmo20g00696 | Cmo-Chr20:3448685 | 2.06E-67 | dispersed | |
Cmo20g00696 | Cmo-Chr20:3448685 | Cmo11g00414 | Cmo-Chr11:2033089 | 1.02E-07 | dispersed | |
Cmo18g00997 | Cmo-Chr18:10895344 | Cmo20g00696 | Cmo-Chr20:3448685 | 3.05E-29 | transposed | |
Cmo11g01818 | Cmo-Chr11:12734629 | Cmo20g00696 | Cmo-Chr20:3448685 | 3.34E-180 | wgd | |
Cmo19g00853 | Cmo-Chr19:8279509 | Cmo20g00696 | Cmo-Chr20:3448685 | 0 | wgd | |
Cmo02g00244 | Cmo-Chr2:1142560 | Cmo20g00696 | Cmo-Chr20:3448685 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11756 | PF06203 | CCT | 4.60E-16 | CL0281 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00696 | - | - | csv:101216401 | 698.353 |