Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00696 ATGGGTTTCATGTGTGATTTTTGTGGGGCTCAAAAGTCGATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCACTCGGCCAACGCCTTGTCGAAGCGTCATACAAGAACGCTGTTGTGTGAAAAATGCCATACGCAACCCGCTGTGGCGAGATGTATTGATGAGAGGATTTCTTTGTGTCAAAATTGTGACTGGATGGGCCATGGCACATCTACCTCAGCTTCATCGTCACACAAGAGACAAGCCATTAATTGCTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTTCCCTCTGGAAATGATGCTTGTGAGACAGAGTTGGGATTGATGAGCATTGCGGAGACCGACTTGACGGGCGCTGGTCAAAGAATGCTTGGGTCAACTGAAGCCAGTGACGTTTGCAGCCGGGAAAAGTCAAATGTTTTGGATGGATCATCTTCACTCACTGATTTTCGCTCTAGGCCGCACACTTCAGGCCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACGAAAGTTGCTGGATTCTTCGGTGAAGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAACGGTGGAATTGATAGCCTTTTCGACTCAAGAGGCCTTTCGTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGTTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACTGAACCAATTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTCCCTGGCGAGAGTAGTGTTGGTGAATATCAAGACTGTGGAGCCTCTTCAATGCTTCTAAGGGGAGAGCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTATTGAACGTAACAATGCTGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCAAGTTCGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCAGATGGCAGAAGACGTGTGAAGGGACGGTTTGTGAAGGCAGGAGAGGCCTATGATTGCGACCCACTGAACCGGACTAGAAGCTGCTGA 1230 47.24 MGFMCDFCGAQKSMVYCRSDAACLCLSCDRNVHSANALSKRHTRTLLCEKCHTQPAVARCIDERISLCQNCDWMGHGTSTSASSSHKRQAINCYSGCPSAAELSSIWSFVLDVPSGNDACETELGLMSIAETDLTGAGQRMLGSTEASDVCSREKSNVLDGSSSLTDFRSRPHTSGQPVELANVALPKFCCPGTKVAGFFGEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDSLFDSRGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQAQSGVSFSGLPGESSVGEYQDCGASSMLLRGEPPWCVPGTESSFPSIERNNAVLRYKEKKKTRKFEKTVRYATRKARADGRRRVKGRFVKAGEAYDCDPLNRTRSC 409
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 3448685 3452849 + CmoCh20G006960.1 Cmo20g00696 405013
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00696 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Cmo20g00696 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Cmo20g00696 409 CDD Bbox1_BBX-like 5 47 - -
Cmo20g00696 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Cmo20g00696 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo20g00696 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
Cmo20g00696 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00155 Cmo-Chr2:752523 Cmo20g00696 Cmo-Chr20:3448685 1.57E-34 dispersed
Cmo14g01166 Cmo-Chr14:9455451 Cmo20g00696 Cmo-Chr20:3448685 1.64E-06 dispersed
Cmo14g01479 Cmo-Chr14:11940455 Cmo20g00696 Cmo-Chr20:3448685 1.12E-13 dispersed
Cmo20g00608 Cmo-Chr20:2982028 Cmo20g00696 Cmo-Chr20:3448685 2.06E-67 dispersed
Cmo20g00696 Cmo-Chr20:3448685 Cmo11g00414 Cmo-Chr11:2033089 1.02E-07 dispersed
Cmo18g00997 Cmo-Chr18:10895344 Cmo20g00696 Cmo-Chr20:3448685 3.05E-29 transposed
Cmo11g01818 Cmo-Chr11:12734629 Cmo20g00696 Cmo-Chr20:3448685 3.34E-180 wgd
Cmo19g00853 Cmo-Chr19:8279509 Cmo20g00696 Cmo-Chr20:3448685 0 wgd
Cmo02g00244 Cmo-Chr2:1142560 Cmo20g00696 Cmo-Chr20:3448685 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11756 PF06203 CCT 4.60E-16 CL0281 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00696 - - csv:101216401 698.353