Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00696 ATGGGTTTCATGTGTGATTTTTGTGGGGCTCAAAAGTCGATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCACTCGGCCAACGCCTTGTCGAAGCGTCATACAAGAACGCTGTTGTGTGAAAAATGCCATACGCAACCCGCTGTGGCGAGATGTATTGATGAGAGGATTTCTTTGTGTCAAAATTGTGACTGGATGGGCCATGGCACATCTACCTCAGCTTCATCGTCACACAAGAGACAAGCCATTAATTGCTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTTCCCTCTGGAAATGATGCTTGTGAGACAGAGTTGGGATTGATGAGCATTGCGGAGACCGACTTGACGGGCGCTGGTCAAAGAATGCTTGGGTCAACTGAAGCCAGTGACGTTTGCAGCCGGGAAAAGTCAAATGTTTTGGATGGATCATCTTCACTCACTGATTTTCGCTCTAGGCCGCACACTTCAGGCCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACGAAAGTTGCTGGATTCTTCGGTGAAGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAACGGTGGAATTGATAGCCTTTTCGACTCAAGAGGCCTTTCGTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGTTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACTGAACCAATTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTCCCTGGCGAGAGTAGTGTTGGTGAATATCAAGACTGTGGAGCCTCTTCAATGCTTCTAAGGGGAGAGCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTATTGAACGTAACAATGCTGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCAAGTTCGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCAGATGGCAGAAGACGTGTGAAGGGACGGTTTGTGAAGGCAGGAGAGGCCTATGATTGCGACCCACTGAACCGGACTAGAAGCTGCTGA 1230 47.24 MGFMCDFCGAQKSMVYCRSDAACLCLSCDRNVHSANALSKRHTRTLLCEKCHTQPAVARCIDERISLCQNCDWMGHGTSTSASSSHKRQAINCYSGCPSAAELSSIWSFVLDVPSGNDACETELGLMSIAETDLTGAGQRMLGSTEASDVCSREKSNVLDGSSSLTDFRSRPHTSGQPVELANVALPKFCCPGTKVAGFFGEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDSLFDSRGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQAQSGVSFSGLPGESSVGEYQDCGASSMLLRGEPPWCVPGTESSFPSIERNNAVLRYKEKKKTRKFEKTVRYATRKARADGRRRVKGRFVKAGEAYDCDPLNRTRSC 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3448685 3452849 + CmoCh20G006960.1 Cmo20g00696 405013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00696 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Cmo20g00696 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Cmo20g00696 409 CDD Bbox1_BBX-like 5 47 - -
Cmo20g00696 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Cmo20g00696 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo20g00696 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
Cmo20g00696 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00696 - - - csv:101216401 698.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00155 Cmo-Chr2:752523 Cmo20g00696 Cmo-Chr20:3448685 1.57E-34 dispersed
Cmo14g01166 Cmo-Chr14:9455451 Cmo20g00696 Cmo-Chr20:3448685 1.64E-06 dispersed
Cmo14g01479 Cmo-Chr14:11940455 Cmo20g00696 Cmo-Chr20:3448685 1.12E-13 dispersed
Cmo20g00608 Cmo-Chr20:2982028 Cmo20g00696 Cmo-Chr20:3448685 2.06E-67 dispersed
Cmo20g00696 Cmo-Chr20:3448685 Cmo11g00414 Cmo-Chr11:2033089 1.02E-07 dispersed
Cmo18g00997 Cmo-Chr18:10895344 Cmo20g00696 Cmo-Chr20:3448685 3.05E-29 transposed
Cmo11g01818 Cmo-Chr11:12734629 Cmo20g00696 Cmo-Chr20:3448685 3.34E-180 wgd
Cmo19g00853 Cmo-Chr19:8279509 Cmo20g00696 Cmo-Chr20:3448685 0 wgd
Cmo02g00244 Cmo-Chr2:1142560 Cmo20g00696 Cmo-Chr20:3448685 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00329 CST 6 323 C2C2-CO-like Transcription Factor Family AT5G15850 51.1 2.6e-42 170.2
Cmo12g00329 CST 4 332 C2C2-CO-like Transcription Factor Family AT3G02380 50.7 1.4e-40 164.5
Cmo05g00340 CST 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 4.1e-83 305.8
Cmo12g00329 CST 1 329 C2C2-CO-like Transcription Factor Family AT5G24930 59.4 2.4e-75 280.0
Cmo11g00414 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.9e-56 217.2
Cmo10g00449 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 9.5e-56 214.9
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 56.0 2.0e-93 340.1
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 5.1e-89 325.5
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.2e-87 318.2
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 4.1e-86 315.8
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo11g01107 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 1.2e-52 204.5
Cmo01g02006 CCT,ECH 1 196 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.9e-51 199.9
Cmo20g00825 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 51.2 1.8e-45 180.6
Cmo04g00707 CST 1 276 C2C2-CO-like Transcription Factor Family AT1G78600 50.2 1.8e-74 276.9
Cmo04g00794 CCT,ECH 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 3.8e-55 211.8
Cmo07g00440 CCT,CST,ECH 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 7.0e-49 191.0
Cmo03g00728 CCT,CST,ECH 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT2G21320 81.4 5.0e-39 158.3
Cmo04g00794 CCT,ECH 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.4 2.8e-56 215.7
Cmo07g00440 CCT,CST,ECH 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 68.2 4.2e-52 201.8
Cmo03g00728 CCT,CST,ECH 1 168 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 2.8e-48 189.1
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT4G38960 81.4 2.2e-40 162.9
Cmo11g01107 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 53.8 4.6e-54 208.8
Cmo12g00380 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11756 PF06203 CCT 4.60E-16 CL0281 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00696 Cmo_Chr20 FPKM 40.399109 40.920795 58.101181 55.875332 53.290527 57.42202 54.715275 50.447418 50.839062 47.493687